Protein–RNA interactions for Protein: A0A5B6

TCRBV3S1, T-cell receptor beta variable 28 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV3S1A0A5B6 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TCRBV3S1A0A5B6 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC18.89■□□□□ 0.61
TCRBV3S1A0A5B6 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TCRBV3S1A0A5B6 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TCRBV3S1A0A5B6 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TCRBV3S1A0A5B6 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TCRBV3S1A0A5B6 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TCRBV3S1A0A5B6 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.88■□□□□ 0.61
TCRBV3S1A0A5B6 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TCRBV3S1A0A5B6 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
TCRBV3S1A0A5B6 MFF-208ENST00000409616 1247 ntTSL 5 BASIC18.88■□□□□ 0.61
TCRBV3S1A0A5B6 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
TCRBV3S1A0A5B6 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC18.88■□□□□ 0.61
TCRBV3S1A0A5B6 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC18.88■□□□□ 0.61
TCRBV3S1A0A5B6 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
TCRBV3S1A0A5B6 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC18.88■□□□□ 0.61
TCRBV3S1A0A5B6 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC18.88■□□□□ 0.61
TCRBV3S1A0A5B6 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC18.88■□□□□ 0.61
TCRBV3S1A0A5B6 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
TCRBV3S1A0A5B6 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC18.88■□□□□ 0.61
TCRBV3S1A0A5B6 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
TCRBV3S1A0A5B6 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC18.88■□□□□ 0.61
TCRBV3S1A0A5B6 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
TCRBV3S1A0A5B6 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
TCRBV3S1A0A5B6 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
TCRBV3S1A0A5B6 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TCRBV3S1A0A5B6 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TCRBV3S1A0A5B6 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TCRBV3S1A0A5B6 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC18.87■□□□□ 0.61
TCRBV3S1A0A5B6 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TCRBV3S1A0A5B6 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC18.87■□□□□ 0.61
TCRBV3S1A0A5B6 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
TCRBV3S1A0A5B6 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
TCRBV3S1A0A5B6 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TCRBV3S1A0A5B6 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TCRBV3S1A0A5B6 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TCRBV3S1A0A5B6 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TCRBV3S1A0A5B6 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
TCRBV3S1A0A5B6 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC18.87■□□□□ 0.61
TCRBV3S1A0A5B6 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
TCRBV3S1A0A5B6 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC18.87■□□□□ 0.61
TCRBV3S1A0A5B6 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC18.87■□□□□ 0.61
TCRBV3S1A0A5B6 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC18.87■□□□□ 0.61
TCRBV3S1A0A5B6 SRR-208ENST00000576848 588 ntTSL 4 BASIC18.87■□□□□ 0.61
TCRBV3S1A0A5B6 GRAMD4P7-201ENST00000578182 1232 ntBASIC18.87■□□□□ 0.61
TCRBV3S1A0A5B6 AC126544.1-201ENST00000580842 1059 ntBASIC18.87■□□□□ 0.61
TCRBV3S1A0A5B6 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
TCRBV3S1A0A5B6 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TCRBV3S1A0A5B6 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
TCRBV3S1A0A5B6 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC18.87■□□□□ 0.61
TCRBV3S1A0A5B6 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC18.86■□□□□ 0.61
TCRBV3S1A0A5B6 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC18.86■□□□□ 0.61
TCRBV3S1A0A5B6 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
TCRBV3S1A0A5B6 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TCRBV3S1A0A5B6 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TCRBV3S1A0A5B6 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
TCRBV3S1A0A5B6 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
TCRBV3S1A0A5B6 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
TCRBV3S1A0A5B6 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC18.86■□□□□ 0.61
TCRBV3S1A0A5B6 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TCRBV3S1A0A5B6 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
TCRBV3S1A0A5B6 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC18.86■□□□□ 0.61
TCRBV3S1A0A5B6 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TCRBV3S1A0A5B6 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC18.86■□□□□ 0.61
TCRBV3S1A0A5B6 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC18.86■□□□□ 0.61
TCRBV3S1A0A5B6 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TCRBV3S1A0A5B6 AICDA-202ENST00000537228 667 ntTSL 5 BASIC18.86■□□□□ 0.61
TCRBV3S1A0A5B6 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
TCRBV3S1A0A5B6 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC18.86■□□□□ 0.61
TCRBV3S1A0A5B6 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TCRBV3S1A0A5B6 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TCRBV3S1A0A5B6 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
TCRBV3S1A0A5B6 STK25-205ENST00000405883 1904 ntTSL 2 BASIC18.86■□□□□ 0.61
TCRBV3S1A0A5B6 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
TCRBV3S1A0A5B6 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC18.86■□□□□ 0.61
TCRBV3S1A0A5B6 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC18.85■□□□□ 0.61
TCRBV3S1A0A5B6 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC18.85■□□□□ 0.61
TCRBV3S1A0A5B6 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC18.85■□□□□ 0.61
TCRBV3S1A0A5B6 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
TCRBV3S1A0A5B6 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC18.85■□□□□ 0.61
TCRBV3S1A0A5B6 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
TCRBV3S1A0A5B6 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
TCRBV3S1A0A5B6 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.85■□□□□ 0.61
TCRBV3S1A0A5B6 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC18.85■□□□□ 0.61
TCRBV3S1A0A5B6 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TCRBV3S1A0A5B6 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
TCRBV3S1A0A5B6 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TCRBV3S1A0A5B6 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TCRBV3S1A0A5B6 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TCRBV3S1A0A5B6 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC18.85■□□□□ 0.61
TCRBV3S1A0A5B6 PTPA-214ENST00000423100 988 ntTSL 2 BASIC18.85■□□□□ 0.61
TCRBV3S1A0A5B6 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
TCRBV3S1A0A5B6 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC18.85■□□□□ 0.61
TCRBV3S1A0A5B6 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC18.85■□□□□ 0.61
TCRBV3S1A0A5B6 MOK-225ENST00000522867 1883 ntTSL 5 BASIC18.85■□□□□ 0.61
TCRBV3S1A0A5B6 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC18.85■□□□□ 0.61
TCRBV3S1A0A5B6 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
TCRBV3S1A0A5B6 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TCRBV3S1A0A5B6 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
TCRBV3S1A0A5B6 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms