Protein–RNA interactions for Protein: Q9NUG4

CCM2L, Cerebral cavernous malformations 2 protein-like, humanhuman

Predicted RBP Predictions only

Length 571 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2LQ9NUG4 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC19.18■□□□□ 0.66
CCM2LQ9NUG4 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
CCM2LQ9NUG4 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCM2LQ9NUG4 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCM2LQ9NUG4 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
CCM2LQ9NUG4 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC19.18■□□□□ 0.66
CCM2LQ9NUG4 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCM2LQ9NUG4 LINC02228-203ENST00000641970 1355 ntBASIC19.18■□□□□ 0.66
CCM2LQ9NUG4 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCM2LQ9NUG4 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCM2LQ9NUG4 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCM2LQ9NUG4 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCM2LQ9NUG4 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCM2LQ9NUG4 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCM2LQ9NUG4 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCM2LQ9NUG4 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCM2LQ9NUG4 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCM2LQ9NUG4 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCM2LQ9NUG4 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCM2LQ9NUG4 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC19.17■□□□□ 0.66
CCM2LQ9NUG4 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC19.17■□□□□ 0.66
CCM2LQ9NUG4 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCM2LQ9NUG4 RNF146-206ENST00000480444 843 ntTSL 2 BASIC19.17■□□□□ 0.66
CCM2LQ9NUG4 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC19.17■□□□□ 0.66
CCM2LQ9NUG4 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC19.17■□□□□ 0.66
CCM2LQ9NUG4 TERF1P2-201ENST00000583350 1212 ntBASIC19.17■□□□□ 0.66
CCM2LQ9NUG4 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCM2LQ9NUG4 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCM2LQ9NUG4 AC080038.1-201ENST00000611274 1154 ntBASIC19.17■□□□□ 0.66
CCM2LQ9NUG4 GXYLT1P5-201ENST00000614548 1189 ntBASIC19.17■□□□□ 0.66
CCM2LQ9NUG4 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCM2LQ9NUG4 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
CCM2LQ9NUG4 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCM2LQ9NUG4 AC005332.7-201ENST00000614046 2005 ntBASIC19.17■□□□□ 0.66
CCM2LQ9NUG4 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
CCM2LQ9NUG4 AC004408.2-201ENST00000623613 2777 ntBASIC19.16■□□□□ 0.66
CCM2LQ9NUG4 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCM2LQ9NUG4 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCM2LQ9NUG4 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC19.16■□□□□ 0.66
CCM2LQ9NUG4 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCM2LQ9NUG4 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC19.16■□□□□ 0.66
CCM2LQ9NUG4 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCM2LQ9NUG4 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
CCM2LQ9NUG4 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC19.16■□□□□ 0.66
CCM2LQ9NUG4 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC19.16■□□□□ 0.66
CCM2LQ9NUG4 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCM2LQ9NUG4 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCM2LQ9NUG4 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCM2LQ9NUG4 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCM2LQ9NUG4 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
CCM2LQ9NUG4 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC19.16■□□□□ 0.66
CCM2LQ9NUG4 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC19.16■□□□□ 0.66
CCM2LQ9NUG4 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CCM2LQ9NUG4 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCM2LQ9NUG4 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCM2LQ9NUG4 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC19.16■□□□□ 0.66
CCM2LQ9NUG4 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC19.16■□□□□ 0.66
CCM2LQ9NUG4 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCM2LQ9NUG4 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.16■□□□□ 0.66
CCM2LQ9NUG4 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC19.16■□□□□ 0.66
CCM2LQ9NUG4 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC19.16■□□□□ 0.66
CCM2LQ9NUG4 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
CCM2LQ9NUG4 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCM2LQ9NUG4 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCM2LQ9NUG4 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
CCM2LQ9NUG4 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCM2LQ9NUG4 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCM2LQ9NUG4 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCM2LQ9NUG4 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCM2LQ9NUG4 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCM2LQ9NUG4 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC19.15■□□□□ 0.66
CCM2LQ9NUG4 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CCM2LQ9NUG4 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC19.15■□□□□ 0.66
CCM2LQ9NUG4 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCM2LQ9NUG4 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCM2LQ9NUG4 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC19.15■□□□□ 0.66
CCM2LQ9NUG4 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCM2LQ9NUG4 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CCM2LQ9NUG4 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC19.15■□□□□ 0.66
CCM2LQ9NUG4 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCM2LQ9NUG4 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCM2LQ9NUG4 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCM2LQ9NUG4 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CCM2LQ9NUG4 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CCM2LQ9NUG4 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
CCM2LQ9NUG4 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.14■□□□□ 0.66
CCM2LQ9NUG4 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC19.14■□□□□ 0.66
CCM2LQ9NUG4 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CCM2LQ9NUG4 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCM2LQ9NUG4 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CCM2LQ9NUG4 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC19.14■□□□□ 0.65
CCM2LQ9NUG4 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC19.14■□□□□ 0.65
CCM2LQ9NUG4 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCM2LQ9NUG4 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCM2LQ9NUG4 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC19.14■□□□□ 0.65
CCM2LQ9NUG4 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCM2LQ9NUG4 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CCM2LQ9NUG4 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCM2LQ9NUG4 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCM2LQ9NUG4 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms