Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CHMP1AQ9HD42 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC17.34■□□□□ 0.37
CHMP1AQ9HD42 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CHMP1AQ9HD42 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC17.34■□□□□ 0.37
CHMP1AQ9HD42 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHMP1AQ9HD42 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC17.34■□□□□ 0.37
CHMP1AQ9HD42 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC17.34■□□□□ 0.37
CHMP1AQ9HD42 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC17.34■□□□□ 0.37
CHMP1AQ9HD42 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC17.34■□□□□ 0.37
CHMP1AQ9HD42 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC17.34■□□□□ 0.37
CHMP1AQ9HD42 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC17.34■□□□□ 0.37
CHMP1AQ9HD42 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.34■□□□□ 0.37
CHMP1AQ9HD42 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHMP1AQ9HD42 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHMP1AQ9HD42 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHMP1AQ9HD42 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHMP1AQ9HD42 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHMP1AQ9HD42 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
CHMP1AQ9HD42 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHMP1AQ9HD42 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.37
CHMP1AQ9HD42 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC17.33■□□□□ 0.37
CHMP1AQ9HD42 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CHMP1AQ9HD42 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CHMP1AQ9HD42 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CHMP1AQ9HD42 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
CHMP1AQ9HD42 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CHMP1AQ9HD42 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC17.33■□□□□ 0.37
CHMP1AQ9HD42 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
CHMP1AQ9HD42 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC17.33■□□□□ 0.37
CHMP1AQ9HD42 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CHMP1AQ9HD42 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
CHMP1AQ9HD42 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
CHMP1AQ9HD42 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CHMP1AQ9HD42 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
CHMP1AQ9HD42 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
CHMP1AQ9HD42 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CHMP1AQ9HD42 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.36
CHMP1AQ9HD42 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC17.33■□□□□ 0.36
CHMP1AQ9HD42 NT5C3AP1-201ENST00000394500 1012 ntBASIC17.33■□□□□ 0.36
CHMP1AQ9HD42 NALT1-201ENST00000429224 738 ntTSL 5 BASIC17.33■□□□□ 0.36
CHMP1AQ9HD42 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC17.33■□□□□ 0.36
CHMP1AQ9HD42 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHMP1AQ9HD42 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC17.33■□□□□ 0.36
CHMP1AQ9HD42 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CHMP1AQ9HD42 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHMP1AQ9HD42 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC17.33■□□□□ 0.36
CHMP1AQ9HD42 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHMP1AQ9HD42 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHMP1AQ9HD42 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHMP1AQ9HD42 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHMP1AQ9HD42 AC011484.1-201ENST00000377652 1995 ntBASIC17.33■□□□□ 0.36
CHMP1AQ9HD42 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
CHMP1AQ9HD42 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHMP1AQ9HD42 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC17.33■□□□□ 0.36
CHMP1AQ9HD42 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CHMP1AQ9HD42 EXOC3-AS1-202ENST00000623673 1663 ntBASIC17.32■□□□□ 0.36
CHMP1AQ9HD42 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHMP1AQ9HD42 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
CHMP1AQ9HD42 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
CHMP1AQ9HD42 SMG8-203ENST00000578922 2178 ntBASIC17.32■□□□□ 0.36
CHMP1AQ9HD42 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
CHMP1AQ9HD42 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHMP1AQ9HD42 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
CHMP1AQ9HD42 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHMP1AQ9HD42 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHMP1AQ9HD42 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CHMP1AQ9HD42 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHMP1AQ9HD42 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHMP1AQ9HD42 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CHMP1AQ9HD42 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC17.32■□□□□ 0.36
CHMP1AQ9HD42 AC012414.1-201ENST00000556676 535 ntBASIC17.32■□□□□ 0.36
CHMP1AQ9HD42 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC17.32■□□□□ 0.36
CHMP1AQ9HD42 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC17.32■□□□□ 0.36
CHMP1AQ9HD42 AL354811.1-201ENST00000610286 706 ntBASIC17.32■□□□□ 0.36
CHMP1AQ9HD42 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
CHMP1AQ9HD42 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHMP1AQ9HD42 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CHMP1AQ9HD42 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC17.32■□□□□ 0.36
CHMP1AQ9HD42 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CHMP1AQ9HD42 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHMP1AQ9HD42 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CHMP1AQ9HD42 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
CHMP1AQ9HD42 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC17.31■□□□□ 0.36
CHMP1AQ9HD42 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
CHMP1AQ9HD42 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CHMP1AQ9HD42 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.31■□□□□ 0.36
CHMP1AQ9HD42 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHMP1AQ9HD42 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CHMP1AQ9HD42 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
CHMP1AQ9HD42 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CHMP1AQ9HD42 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CHMP1AQ9HD42 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CHMP1AQ9HD42 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC17.31■□□□□ 0.36
CHMP1AQ9HD42 AC079140.4-201ENST00000507448 529 ntBASIC17.31■□□□□ 0.36
CHMP1AQ9HD42 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC17.31■□□□□ 0.36
CHMP1AQ9HD42 AC110285.6-201ENST00000617652 491 ntBASIC17.31■□□□□ 0.36
CHMP1AQ9HD42 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CHMP1AQ9HD42 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHMP1AQ9HD42 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC17.31■□□□□ 0.36
CHMP1AQ9HD42 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms