Protein–RNA interactions for Protein: Q9H1A7

POLR2J3, DNA-directed RNA polymerase II subunit RPB11-b2, humanhuman

Known RBP Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3Q9H1A7 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
POLR2J3Q9H1A7 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
POLR2J3Q9H1A7 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC18.65■□□□□ 0.58
POLR2J3Q9H1A7 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
POLR2J3Q9H1A7 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC18.65■□□□□ 0.58
POLR2J3Q9H1A7 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
POLR2J3Q9H1A7 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
POLR2J3Q9H1A7 AC019069.1-201ENST00000610008 1333 ntBASIC18.65■□□□□ 0.58
POLR2J3Q9H1A7 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
POLR2J3Q9H1A7 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
POLR2J3Q9H1A7 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
POLR2J3Q9H1A7 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
POLR2J3Q9H1A7 KRT8P36-201ENST00000489121 1440 ntBASIC18.65■□□□□ 0.58
POLR2J3Q9H1A7 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
POLR2J3Q9H1A7 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC18.65■□□□□ 0.58
POLR2J3Q9H1A7 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC18.65■□□□□ 0.58
POLR2J3Q9H1A7 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC18.64■□□□□ 0.58
POLR2J3Q9H1A7 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC18.64■□□□□ 0.58
POLR2J3Q9H1A7 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
POLR2J3Q9H1A7 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
POLR2J3Q9H1A7 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC18.64■□□□□ 0.57
POLR2J3Q9H1A7 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC18.64■□□□□ 0.57
POLR2J3Q9H1A7 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
POLR2J3Q9H1A7 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
POLR2J3Q9H1A7 AC097381.1-201ENST00000429019 1296 ntBASIC18.64■□□□□ 0.57
POLR2J3Q9H1A7 CDV3P1-201ENST00000471403 739 ntBASIC18.64■□□□□ 0.57
POLR2J3Q9H1A7 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
POLR2J3Q9H1A7 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC18.64■□□□□ 0.57
POLR2J3Q9H1A7 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
POLR2J3Q9H1A7 AC004854.2-201ENST00000608450 1441 ntBASIC18.64■□□□□ 0.57
POLR2J3Q9H1A7 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC18.64■□□□□ 0.57
POLR2J3Q9H1A7 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
POLR2J3Q9H1A7 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
POLR2J3Q9H1A7 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
POLR2J3Q9H1A7 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
POLR2J3Q9H1A7 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
POLR2J3Q9H1A7 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
POLR2J3Q9H1A7 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
POLR2J3Q9H1A7 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
POLR2J3Q9H1A7 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
POLR2J3Q9H1A7 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
POLR2J3Q9H1A7 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
POLR2J3Q9H1A7 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC18.63■□□□□ 0.57
POLR2J3Q9H1A7 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC18.63■□□□□ 0.57
POLR2J3Q9H1A7 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC18.63■□□□□ 0.57
POLR2J3Q9H1A7 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC18.63■□□□□ 0.57
POLR2J3Q9H1A7 TFG-210ENST00000620299 1289 ntTSL 5 BASIC18.63■□□□□ 0.57
POLR2J3Q9H1A7 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
POLR2J3Q9H1A7 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
POLR2J3Q9H1A7 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
POLR2J3Q9H1A7 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
POLR2J3Q9H1A7 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
POLR2J3Q9H1A7 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
POLR2J3Q9H1A7 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
POLR2J3Q9H1A7 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
POLR2J3Q9H1A7 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
POLR2J3Q9H1A7 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC18.63■□□□□ 0.57
POLR2J3Q9H1A7 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
POLR2J3Q9H1A7 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC18.63■□□□□ 0.57
POLR2J3Q9H1A7 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
POLR2J3Q9H1A7 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC18.62■□□□□ 0.57
POLR2J3Q9H1A7 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC18.62■□□□□ 0.57
POLR2J3Q9H1A7 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
POLR2J3Q9H1A7 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
POLR2J3Q9H1A7 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC18.62■□□□□ 0.57
POLR2J3Q9H1A7 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC18.62■□□□□ 0.57
POLR2J3Q9H1A7 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
POLR2J3Q9H1A7 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC18.62■□□□□ 0.57
POLR2J3Q9H1A7 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC18.62■□□□□ 0.57
POLR2J3Q9H1A7 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC18.62■□□□□ 0.57
POLR2J3Q9H1A7 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
POLR2J3Q9H1A7 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
POLR2J3Q9H1A7 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
POLR2J3Q9H1A7 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
POLR2J3Q9H1A7 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC18.62■□□□□ 0.57
POLR2J3Q9H1A7 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
POLR2J3Q9H1A7 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC18.62■□□□□ 0.57
POLR2J3Q9H1A7 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
POLR2J3Q9H1A7 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC18.61■□□□□ 0.57
POLR2J3Q9H1A7 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
POLR2J3Q9H1A7 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
POLR2J3Q9H1A7 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
POLR2J3Q9H1A7 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
POLR2J3Q9H1A7 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
POLR2J3Q9H1A7 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC18.61■□□□□ 0.57
POLR2J3Q9H1A7 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC18.61■□□□□ 0.57
POLR2J3Q9H1A7 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC18.61■□□□□ 0.57
POLR2J3Q9H1A7 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC18.61■□□□□ 0.57
POLR2J3Q9H1A7 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC18.61■□□□□ 0.57
POLR2J3Q9H1A7 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
POLR2J3Q9H1A7 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC18.61■□□□□ 0.57
POLR2J3Q9H1A7 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC18.61■□□□□ 0.57
POLR2J3Q9H1A7 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
POLR2J3Q9H1A7 PGM5P4-201ENST00000421970 445 ntBASIC18.61■□□□□ 0.57
POLR2J3Q9H1A7 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC18.61■□□□□ 0.57
POLR2J3Q9H1A7 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC18.61■□□□□ 0.57
POLR2J3Q9H1A7 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC18.61■□□□□ 0.57
POLR2J3Q9H1A7 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
POLR2J3Q9H1A7 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
POLR2J3Q9H1A7 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms