Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC19.76■□□□□ 0.75
LMX1AQ8TE12 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LMX1AQ8TE12 PRKY-204ENST00000533551 1019 ntBASIC19.76■□□□□ 0.75
LMX1AQ8TE12 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LMX1AQ8TE12 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC19.76■□□□□ 0.75
LMX1AQ8TE12 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC19.76■□□□□ 0.75
LMX1AQ8TE12 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LMX1AQ8TE12 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC19.76■□□□□ 0.75
LMX1AQ8TE12 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LMX1AQ8TE12 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
LMX1AQ8TE12 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC19.76■□□□□ 0.75
LMX1AQ8TE12 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LMX1AQ8TE12 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LMX1AQ8TE12 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
LMX1AQ8TE12 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LMX1AQ8TE12 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LMX1AQ8TE12 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC19.75■□□□□ 0.75
LMX1AQ8TE12 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LMX1AQ8TE12 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
LMX1AQ8TE12 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
LMX1AQ8TE12 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LMX1AQ8TE12 HES2-206ENST00000489730 730 ntTSL 2 BASIC19.75■□□□□ 0.75
LMX1AQ8TE12 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC19.75■□□□□ 0.75
LMX1AQ8TE12 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC19.75■□□□□ 0.75
LMX1AQ8TE12 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC19.75■□□□□ 0.75
LMX1AQ8TE12 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC19.75■□□□□ 0.75
LMX1AQ8TE12 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LMX1AQ8TE12 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC19.75■□□□□ 0.75
LMX1AQ8TE12 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC19.75■□□□□ 0.75
LMX1AQ8TE12 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LMX1AQ8TE12 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LMX1AQ8TE12 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC19.74■□□□□ 0.75
LMX1AQ8TE12 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
LMX1AQ8TE12 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.74■□□□□ 0.75
LMX1AQ8TE12 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LMX1AQ8TE12 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LMX1AQ8TE12 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
LMX1AQ8TE12 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LMX1AQ8TE12 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LMX1AQ8TE12 RPS2P55-201ENST00000397318 883 ntBASIC19.74■□□□□ 0.75
LMX1AQ8TE12 AC012618.2-201ENST00000428058 849 ntBASIC19.74■□□□□ 0.75
LMX1AQ8TE12 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC19.74■□□□□ 0.75
LMX1AQ8TE12 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC19.74■□□□□ 0.75
LMX1AQ8TE12 AC107956.1-201ENST00000494359 873 ntBASIC19.74■□□□□ 0.75
LMX1AQ8TE12 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC19.74■□□□□ 0.75
LMX1AQ8TE12 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC19.74■□□□□ 0.75
LMX1AQ8TE12 REXO2-216ENST00000544196 452 ntTSL 3 BASIC19.74■□□□□ 0.75
LMX1AQ8TE12 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC19.74■□□□□ 0.75
LMX1AQ8TE12 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
LMX1AQ8TE12 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LMX1AQ8TE12 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
LMX1AQ8TE12 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LMX1AQ8TE12 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
LMX1AQ8TE12 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
LMX1AQ8TE12 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LMX1AQ8TE12 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LMX1AQ8TE12 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LMX1AQ8TE12 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
LMX1AQ8TE12 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LMX1AQ8TE12 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LMX1AQ8TE12 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LMX1AQ8TE12 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LMX1AQ8TE12 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LMX1AQ8TE12 AC023632.3-201ENST00000521633 145 ntBASIC19.73■□□□□ 0.75
LMX1AQ8TE12 AC233702.5-201ENST00000584107 538 ntBASIC19.73■□□□□ 0.75
LMX1AQ8TE12 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LMX1AQ8TE12 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC19.73■□□□□ 0.75
LMX1AQ8TE12 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC19.73■□□□□ 0.75
LMX1AQ8TE12 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LMX1AQ8TE12 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC19.73■□□□□ 0.75
LMX1AQ8TE12 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LMX1AQ8TE12 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC19.73■□□□□ 0.75
LMX1AQ8TE12 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LMX1AQ8TE12 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC19.73■□□□□ 0.75
LMX1AQ8TE12 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LMX1AQ8TE12 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LMX1AQ8TE12 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LMX1AQ8TE12 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC19.72■□□□□ 0.75
LMX1AQ8TE12 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC19.72■□□□□ 0.75
LMX1AQ8TE12 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
LMX1AQ8TE12 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LMX1AQ8TE12 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LMX1AQ8TE12 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LMX1AQ8TE12 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LMX1AQ8TE12 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
LMX1AQ8TE12 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
LMX1AQ8TE12 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LMX1AQ8TE12 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC19.72■□□□□ 0.75
LMX1AQ8TE12 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
LMX1AQ8TE12 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC19.72■□□□□ 0.75
LMX1AQ8TE12 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LMX1AQ8TE12 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC19.72■□□□□ 0.75
LMX1AQ8TE12 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC19.72■□□□□ 0.75
LMX1AQ8TE12 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
LMX1AQ8TE12 STK25-234ENST00000535007 2459 ntTSL 2 BASIC19.71■□□□□ 0.75
LMX1AQ8TE12 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
LMX1AQ8TE12 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LMX1AQ8TE12 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LMX1AQ8TE12 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
LMX1AQ8TE12 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms