Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
LINC00643Q86TS7 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC12.69□□□□□ -0.38
LINC00643Q86TS7 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
LINC00643Q86TS7 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
LINC00643Q86TS7 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC12.68□□□□□ -0.38
LINC00643Q86TS7 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC12.68□□□□□ -0.38
LINC00643Q86TS7 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC00643Q86TS7 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC12.68□□□□□ -0.38
LINC00643Q86TS7 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC00643Q86TS7 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC12.68□□□□□ -0.38
LINC00643Q86TS7 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC12.68□□□□□ -0.38
LINC00643Q86TS7 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
LINC00643Q86TS7 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC00643Q86TS7 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC00643Q86TS7 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC00643Q86TS7 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC12.68□□□□□ -0.38
LINC00643Q86TS7 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC00643Q86TS7 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
LINC00643Q86TS7 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC00643Q86TS7 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC00643Q86TS7 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC00643Q86TS7 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
LINC00643Q86TS7 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
LINC00643Q86TS7 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC00643Q86TS7 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC00643Q86TS7 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
LINC00643Q86TS7 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC00643Q86TS7 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC12.68□□□□□ -0.38
LINC00643Q86TS7 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
LINC00643Q86TS7 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC00643Q86TS7 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
LINC00643Q86TS7 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
LINC00643Q86TS7 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC12.67□□□□□ -0.38
LINC00643Q86TS7 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
LINC00643Q86TS7 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC00643Q86TS7 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC00643Q86TS7 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC00643Q86TS7 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC12.67□□□□□ -0.38
LINC00643Q86TS7 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC00643Q86TS7 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC12.67□□□□□ -0.38
LINC00643Q86TS7 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC00643Q86TS7 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC12.67□□□□□ -0.38
LINC00643Q86TS7 USF2-207ENST00000595068 1612 ntTSL 5 BASIC12.67□□□□□ -0.38
LINC00643Q86TS7 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC00643Q86TS7 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC12.67□□□□□ -0.38
LINC00643Q86TS7 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC12.67□□□□□ -0.38
LINC00643Q86TS7 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC12.67□□□□□ -0.38
LINC00643Q86TS7 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC00643Q86TS7 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC12.67□□□□□ -0.38
LINC00643Q86TS7 AC009053.2-201ENST00000563701 2365 ntBASIC12.67□□□□□ -0.38
LINC00643Q86TS7 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC12.67□□□□□ -0.38
LINC00643Q86TS7 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
LINC00643Q86TS7 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
LINC00643Q86TS7 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC00643Q86TS7 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC12.67□□□□□ -0.38
LINC00643Q86TS7 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC00643Q86TS7 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC00643Q86TS7 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC00643Q86TS7 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC12.67□□□□□ -0.38
LINC00643Q86TS7 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
LINC00643Q86TS7 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC00643Q86TS7 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
LINC00643Q86TS7 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC12.67□□□□□ -0.38
LINC00643Q86TS7 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC00643Q86TS7 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC00643Q86TS7 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC00643Q86TS7 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC12.67□□□□□ -0.38
LINC00643Q86TS7 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
LINC00643Q86TS7 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
LINC00643Q86TS7 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
LINC00643Q86TS7 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC12.66□□□□□ -0.38
LINC00643Q86TS7 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
LINC00643Q86TS7 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
LINC00643Q86TS7 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC12.66□□□□□ -0.38
LINC00643Q86TS7 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
LINC00643Q86TS7 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC12.66□□□□□ -0.38
LINC00643Q86TS7 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
LINC00643Q86TS7 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC12.66□□□□□ -0.38
LINC00643Q86TS7 PKD1P5-201ENST00000532415 10291 ntBASIC12.66□□□□□ -0.38
LINC00643Q86TS7 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
LINC00643Q86TS7 PTGES2-AS1-201ENST00000443493 2100 ntBASIC12.66□□□□□ -0.38
LINC00643Q86TS7 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
LINC00643Q86TS7 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
LINC00643Q86TS7 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
LINC00643Q86TS7 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC12.66□□□□□ -0.38
LINC00643Q86TS7 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
LINC00643Q86TS7 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
LINC00643Q86TS7 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
LINC00643Q86TS7 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
LINC00643Q86TS7 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC12.66□□□□□ -0.38
LINC00643Q86TS7 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
LINC00643Q86TS7 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
LINC00643Q86TS7 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
LINC00643Q86TS7 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC12.66□□□□□ -0.38
LINC00643Q86TS7 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
LINC00643Q86TS7 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
LINC00643Q86TS7 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC12.65□□□□□ -0.38
LINC00643Q86TS7 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
LINC00643Q86TS7 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC12.65□□□□□ -0.38
LINC00643Q86TS7 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC12.65□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms