Protein–RNA interactions for Protein: Q01477

UBP3, Ubiquitin carboxyl-terminal hydrolase 3, yeastyeast

Known RBP RIP-Chip data

Length 912 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UBP3Q01477 RTC6YPL183W-A 282 nt3□□□□□ -1.93 RIP-Chip
UBP3Q01477 YBR224WYBR224W 516 nt3□□□□□ -1.93
UBP3Q01477 snR46snR46 197 nt3□□□□□ -1.93
UBP3Q01477 ISW1YBR245C 3390 nt3□□□□□ -1.93 RIP-Chip
UBP3Q01477 FAR11YNL127W 2862 nt3□□□□□ -1.93
UBP3Q01477 GUP1YGL084C 1683 nt2.99□□□□□ -1.93
UBP3Q01477 SMY2YBR172C 2223 nt2.99□□□□□ -1.93
UBP3Q01477 KAP123YER110C 3342 nt2.99□□□□□ -1.93
UBP3Q01477 ERP6YGL002W 651 nt2.99□□□□□ -1.93 RIP-Chip
UBP3Q01477 INA22YIR024C 651 nt2.99□□□□□ -1.93
UBP3Q01477 COX14YML129C 213 nt2.99□□□□□ -1.93
UBP3Q01477 YOR376WYOR376W 369 nt2.99□□□□□ -1.93
UBP3Q01477 PDE2YOR360C 1581 nt2.99□□□□□ -1.93
UBP3Q01477 YPL216WYPL216W 3309 nt2.99□□□□□ -1.93
UBP3Q01477 VPS35YJL154C 2835 nt2.97□□□□□ -1.93
UBP3Q01477 SWA2YDR320C 2007 nt2.97□□□□□ -1.93 RIP-Chip
UBP3Q01477 DOT6YER088C 2013 nt2.97□□□□□ -1.93
UBP3Q01477 PAN3YKL025C 2040 nt2.97□□□□□ -1.93
UBP3Q01477 SSS1YDR086C 243 nt2.97□□□□□ -1.93 RIP-Chip
UBP3Q01477 YML037CYML037C 1023 nt2.97□□□□□ -1.93
UBP3Q01477 YOR333CYOR333C 417 nt2.97□□□□□ -1.93
UBP3Q01477 RRP6YOR001W 2202 nt2.97□□□□□ -1.93
UBP3Q01477 TOF2YKR010C 2316 nt2.97□□□□□ -1.93
UBP3Q01477 TAE2YPL009C 3117 nt2.97□□□□□ -1.93
UBP3Q01477 SAP1YER047C 2694 nt2.96□□□□□ -1.93 RIP-Chip
UBP3Q01477 BPT1YLL015W 4680 nt2.96□□□□□ -1.93
UBP3Q01477 TMN3YER113C 2121 nt2.96□□□□□ -1.93
UBP3Q01477 YDR209CYDR209C 414 nt2.96□□□□□ -1.94
UBP3Q01477 YDR286CYDR286C 345 nt2.96□□□□□ -1.94
UBP3Q01477 RRP12YPL012W 3687 nt2.96□□□□□ -1.94
UBP3Q01477 SGD1YLR336C 2700 nt2.95□□□□□ -1.94
UBP3Q01477 TCB2YNL087W 3537 nt2.95□□□□□ -1.94
UBP3Q01477 VTC1YER072W 390 nt2.95□□□□□ -1.94
UBP3Q01477 NOP10YHR072W-A 177 nt2.95□□□□□ -1.94
UBP3Q01477 SNC2YOR327C 348 nt2.95□□□□□ -1.94
UBP3Q01477 YPR002C-AYPR002C-A 198 nt2.95□□□□□ -1.94
UBP3Q01477 TOM1YDR457W 9807 nt2.95□□□□□ -1.94
UBP3Q01477 CDC27YBL084C 2277 nt2.94□□□□□ -1.94
UBP3Q01477 ALK2YBL009W 2031 nt2.94□□□□□ -1.94
UBP3Q01477 YBR182C-AYBR182C-A 195 nt2.94□□□□□ -1.94
UBP3Q01477 VPS54YDR027C 2670 nt2.94□□□□□ -1.94
UBP3Q01477 NUP100YKL068W 2880 nt2.94□□□□□ -1.94
UBP3Q01477 ESL1YIL151C 3357 nt2.94□□□□□ -1.94
UBP3Q01477 YGL217CYGL217C 342 nt2.93□□□□□ -1.94
UBP3Q01477 YIR030W-AYIR030W-A 384 nt2.93□□□□□ -1.94
UBP3Q01477 RPS22AYJL190C 393 nt2.93□□□□□ -1.94
UBP3Q01477 AFI1YOR129C 2682 nt2.93□□□□□ -1.94
UBP3Q01477 LRE1YCL051W 1752 nt2.92□□□□□ -1.94
UBP3Q01477 KRE33YNL132W 3171 nt2.92□□□□□ -1.94
UBP3Q01477 PFF1YBR074W 2931 nt2.92□□□□□ -1.94
UBP3Q01477 YPR092WYPR092W 306 nt2.92□□□□□ -1.94
UBP3Q01477 CDC53YDL132W 2448 nt2.92□□□□□ -1.94
UBP3Q01477 FLO11YIR019C 4104 nt2.92□□□□□ -1.94
UBP3Q01477 PLC1YPL268W 2610 nt2.91□□□□□ -1.94 RIP-Chip
UBP3Q01477 YOR381W-AYOR381W-A 168 nt2.91□□□□□ -1.94
UBP3Q01477 LCL1YPL056C 306 nt2.91□□□□□ -1.94 RIP-Chip
UBP3Q01477 RSE1YML049C 4086 nt2.91□□□□□ -1.94 RIP-Chip
UBP3Q01477 CRM1YGR218W 3255 nt2.91□□□□□ -1.94
UBP3Q01477 CUL3YGR003W 2235 nt2.91□□□□□ -1.94 RIP-Chip
UBP3Q01477 SEC5YDR166C 2916 nt2.9□□□□□ -1.94 RIP-Chip
UBP3Q01477 SEC7YDR170C 6030 nt2.9□□□□□ -1.94
UBP3Q01477 RPS27BYHR021C 249 nt2.9□□□□□ -1.95
UBP3Q01477 VMA9YCL005W-A 222 nt2.9□□□□□ -1.95 RIP-Chip
UBP3Q01477 PRP8YHR165C 7242 nt2.9□□□□□ -1.95
UBP3Q01477 RIC1YLR039C 3171 nt2.9□□□□□ -1.95 RIP-Chip
UBP3Q01477 snR74snR74 88 nt2.89□□□□□ -1.95
UBP3Q01477 SNC1YAL030W 354 nt2.89□□□□□ -1.95 RIP-Chip
UBP3Q01477 YKU80YMR106C 1890 nt2.89□□□□□ -1.95 RIP-Chip
UBP3Q01477 AXL1YPR122W 3627 nt2.89□□□□□ -1.95
UBP3Q01477 MUK1YPL070W 1839 nt2.88□□□□□ -1.95
UBP3Q01477 YPL150WYPL150W 2706 nt2.88□□□□□ -1.95
UBP3Q01477 ORC2YBR060C 1863 nt2.88□□□□□ -1.95 RIP-Chip
UBP3Q01477 NOP53YPL146C 1368 nt2.87□□□□□ -1.95
UBP3Q01477 PEX8YGR077C 1770 nt2.87□□□□□ -1.95
UBP3Q01477 YDR098C-BYDR098C-B 5268 nt2.87□□□□□ -1.95
UBP3Q01477 YDR210C-DYDR210C-D 5268 nt2.87□□□□□ -1.95
UBP3Q01477 YDR316W-BYDR316W-B 5268 nt2.87□□□□□ -1.95
UBP3Q01477 YDR365W-BYDR365W-B 5268 nt2.87□□□□□ -1.95
UBP3Q01477 YER138CYER138C 5268 nt2.87□□□□□ -1.95
UBP3Q01477 YER160CYER160C 5268 nt2.87□□□□□ -1.95
UBP3Q01477 YGR038C-BYGR038C-B 5268 nt2.87□□□□□ -1.95
UBP3Q01477 YGR161C-DYGR161C-D 5268 nt2.87□□□□□ -1.95
UBP3Q01477 YJR027WYJR027W 5268 nt2.87□□□□□ -1.95
UBP3Q01477 YLR157C-BYLR157C-B 5268 nt2.87□□□□□ -1.95
UBP3Q01477 YML039WYML039W 5268 nt2.87□□□□□ -1.95
UBP3Q01477 YML045WYML045W 5268 nt2.87□□□□□ -1.95
UBP3Q01477 YMR050CYMR050C 5268 nt2.87□□□□□ -1.95
UBP3Q01477 YOL103W-BYOL103W-B 5268 nt2.87□□□□□ -1.95
UBP3Q01477 YBR012W-BYBR012W-B 5271 nt2.87□□□□□ -1.95
UBP3Q01477 YOR142W-BYOR142W-B 5268 nt2.87□□□□□ -1.95
UBP3Q01477 YPL257W-BYPL257W-B 5268 nt2.87□□□□□ -1.95
UBP3Q01477 YPR158W-BYPR158W-B 5271 nt2.87□□□□□ -1.95
UBP3Q01477 EMC6YLL014W 327 nt2.87□□□□□ -1.95
UBP3Q01477 MMS1YPR164W 4224 nt2.86□□□□□ -1.95
UBP3Q01477 RTT10YPL183C 3042 nt2.86□□□□□ -1.95
UBP3Q01477 ATG11YPR049C 3537 nt2.86□□□□□ -1.95 RIP-Chip
UBP3Q01477 YOR161W-BYOR161W-B 261 nt2.86□□□□□ -1.95
UBP3Q01477 SGF11YPL047W 300 nt2.86□□□□□ -1.95
UBP3Q01477 YBR131C-AYBR131C-A 90 nt2.86□□□□□ -1.95
UBP3Q01477 SPT21YMR179W 2277 nt2.86□□□□□ -1.95
Retrieved 100 of 7,029 protein–RNA pairs in 43.8 ms