RNA–Protein interactions for RNA: YDR457W

TOM1, Transcript of E3 ubiquitin ligase of the hect-domain class, yeast

Gene TOM1, Length 9,807 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TOM1	YDR457W	MNN4	P36044	1178 aa		4.02	□□□□□ -1.77
TOM1	YDR457W	TFA1	P36100	482 aa		3.98	□□□□□ -1.77
TOM1	YDR457W	RQC2	Q12532	1038 aa	Known RBP	3.97	□□□□□ -1.77
TOM1	YDR457W	TAF7	Q05021	590 aa		3.96	□□□□□ -1.78
TOM1	YDR457W	AIM44	Q99299	758 aa		3.77	□□□□□ -1.81
TOM1	YDR457W	SCT1	P32784	759 aa		3.73	□□□□□ -1.81
TOM1	YDR457W	ASF1	P32447	279 aa		3.7	□□□□□ -1.82
TOM1	YDR457W	FPR3	P38911	411 aa	Known RBP	3.7	□□□□□ -1.82
TOM1	YDR457W	DRS1	P32892	752 aa	Known RBP	3.69	□□□□□ -1.82
TOM1	YDR457W	EAF7	P53911	425 aa	Known RBP	3.67	□□□□□ -1.82
TOM1	YDR457W	CAB3	P36076	571 aa		3.66	□□□□□ -1.82
TOM1	YDR457W	RNA1	P11745	407 aa	Known RBP	3.64	□□□□□ -1.83
TOM1	YDR457W	POL5	P39985	1022 aa	Known RBP	3.64	□□□□□ -1.83
TOM1	YDR457W	FUN12	P39730	1002 aa	Known RBP	3.63	□□□□□ -1.83
TOM1	YDR457W	NOP2	P40991	618 aa	Known RBP	3.63	□□□□□ -1.83
TOM1	YDR457W	SAS10	Q12136	610 aa	Predicted RBP	3.62	□□□□□ -1.83
TOM1	YDR457W	MTC1	P47018	478 aa	Known RBP	3.61	□□□□□ -1.83
TOM1	YDR457W	QCR6	P00127	147 aa		3.61	□□□□□ -1.83
TOM1	YDR457W	PAF1	P38351	445 aa		3.6	□□□□□ -1.83
TOM1	YDR457W	SIS2	P36024	562 aa		3.58	□□□□□ -1.84
TOM1	YDR457W	NAP1	P25293	417 aa	Known RBP	3.56	□□□□□ -1.84
TOM1	YDR457W	NOP7	P53261	605 aa	Known RBP	3.56	□□□□□ -1.84
TOM1	YDR457W	LEU3	P08638	886 aa		3.54	□□□□□ -1.84
TOM1	YDR457W	LEO1	P38439	464 aa		3.53	□□□□□ -1.84
TOM1	YDR457W	IFH1	P39520	1085 aa		3.52	□□□□□ -1.85
TOM1	YDR457W	COG8	Q04632	607 aa		3.51	□□□□□ -1.85
TOM1	YDR457W	JIP3	O13555	125 aa		3.5	□□□□□ -1.85
TOM1	YDR457W	BFR2	Q06631	534 aa	Known RBP	3.49	□□□□□ -1.85
TOM1	YDR457W	ESC2	Q06340	456 aa		3.48	□□□□□ -1.85
TOM1	YDR457W	URN1	Q06525	465 aa	Known RBP	3.48	□□□□□ -1.85
TOM1	YDR457W	ORC1	P54784	914 aa	Predicted RBP	3.48	□□□□□ -1.85
TOM1	YDR457W	RTT106	P40161	455 aa		3.47	□□□□□ -1.85
TOM1	YDR457W	KRI1	P42846	591 aa	Known RBP	3.47	□□□□□ -1.85
TOM1	YDR457W	YRB30	P53107	440 aa	Predicted RBP	3.45	□□□□□ -1.86
TOM1	YDR457W	NAB3	P38996	802 aa	Known RBP RIP-Chip data	3.44	□□□□□ -1.86	not detected
TOM1	YDR457W	HSP82	P02829	709 aa	Known RBP	3.43	□□□□□ -1.86
TOM1	YDR457W	CBF5	P33322	483 aa	Known RBP RIP-Chip data	3.42	□□□□□ -1.86	not detected
TOM1	YDR457W	NOP8	Q08287	484 aa	Predicted RBP	3.42	□□□□□ -1.86
TOM1	YDR457W	RIX1	P38883	763 aa	Predicted RBP	3.41	□□□□□ -1.86
TOM1	YDR457W	YFR016C	P43597	1233 aa	Known RBP	3.4	□□□□□ -1.86
TOM1	YDR457W	YPR148C	Q06523	435 aa		3.4	□□□□□ -1.87
TOM1	YDR457W	BTN2	P53286	410 aa		3.39	□□□□□ -1.87
TOM1	YDR457W	ENP1	P38333	483 aa	Known RBP	3.39	□□□□□ -1.87
TOM1	YDR457W	EBP2	P36049	427 aa	Known RBP	3.38	□□□□□ -1.87
TOM1	YDR457W	PAP2	P53632	584 aa	Known RBP	3.37	□□□□□ -1.87
TOM1	YDR457W	CDC11	P32458	415 aa		3.36	□□□□□ -1.87
TOM1	YDR457W	PSH1	Q12161	406 aa		3.36	□□□□□ -1.87
TOM1	YDR457W	NMD2	P38798	1089 aa	Known RBP	3.36	□□□□□ -1.87
TOM1	YDR457W	GLE1	Q12315	538 aa		3.35	□□□□□ -1.87
TOM1	YDR457W	SEC3	P33332	1336 aa	Known RBP	3.35	□□□□□ -1.87
TOM1	YDR457W	NST1	P53935	1240 aa		3.34	□□□□□ -1.87
TOM1	YDR457W	TPM1	P17536	199 aa	Known RBP	3.34	□□□□□ -1.88
TOM1	YDR457W	ENP2	P48234	707 aa	Known RBP	3.33	□□□□□ -1.88
TOM1	YDR457W	RAD2	P07276	1031 aa		3.33	□□□□□ -1.88
TOM1	YDR457W	CKB1	P43639	278 aa		3.32	□□□□□ -1.88
TOM1	YDR457W	DEF1	P35732	738 aa	Known RBP	3.32	□□□□□ -1.88
TOM1	YDR457W	YTA6	P40328	754 aa		3.32	□□□□□ -1.88
TOM1	YDR457W	FPR4	Q06205	392 aa	Predicted RBP	3.32	□□□□□ -1.88
TOM1	YDR457W	YGL081W	P53156	320 aa		3.32	□□□□□ -1.88
TOM1	YDR457W	SVF1	Q05515	481 aa		3.32	□□□□□ -1.88
TOM1	YDR457W	SQT1	P35184	431 aa		3.32	□□□□□ -1.88
TOM1	YDR457W	RPC31	P17890	251 aa		3.31	□□□□□ -1.88
TOM1	YDR457W	MRX12	P47084	519 aa		3.31	□□□□□ -1.88
TOM1	YDR457W	RAD26	P40352	1085 aa		3.31	□□□□□ -1.88
TOM1	YDR457W	NOP58	Q12499	511 aa	Known RBP	3.31	□□□□□ -1.88
TOM1	YDR457W	SLD2	P34252	453 aa		3.31	□□□□□ -1.88
TOM1	YDR457W	CLC1	P17891	233 aa		3.3	□□□□□ -1.88
TOM1	YDR457W	NSR1	P27476	414 aa	Known RBP RIP-Chip data	3.3	□□□□□ -1.88	not detected
TOM1	YDR457W	BUD21	Q08492	214 aa	Predicted RBP	3.3	□□□□□ -1.88
TOM1	YDR457W	MFT1	P33441	392 aa	Known RBP	3.3	□□□□□ -1.88
TOM1	YDR457W	JJJ1	P53863	590 aa		3.3	□□□□□ -1.88
TOM1	YDR457W	SUP35	P05453	685 aa	Known RBP	3.29	□□□□□ -1.88
TOM1	YDR457W	RLP24	Q07915	199 aa	Known RBP	3.29	□□□□□ -1.88
TOM1	YDR457W	ECM16	Q04217	1267 aa	Known RBP	3.29	□□□□□ -1.88
TOM1	YDR457W	PEX14	P53112	341 aa		3.29	□□□□□ -1.88
TOM1	YDR457W	TOA1	P32773	286 aa		3.29	□□□□□ -1.88
TOM1	YDR457W	TPM2	P40414	161 aa		3.29	□□□□□ -1.88
TOM1	YDR457W	GIN4	Q12263	1142 aa		3.29	□□□□□ -1.88
TOM1	YDR457W	SPT5	P27692	1063 aa	Known RBP	3.28	□□□□□ -1.88
TOM1	YDR457W	MAK21	Q12176	1025 aa	Known RBP	3.28	□□□□□ -1.88
TOM1	YDR457W	SPB4	P25808	606 aa	Predicted RBP	3.28	□□□□□ -1.88
TOM1	YDR457W	MIC60	P36112	540 aa		3.28	□□□□□ -1.88
TOM1	YDR457W	ARP5	P53946	755 aa		3.28	□□□□□ -1.88
TOM1	YDR457W	SEG2	P34250	1132 aa		3.28	□□□□□ -1.88
TOM1	YDR457W	DOS2	P54858	310 aa		3.28	□□□□□ -1.88
TOM1	YDR457W	ETT1	Q08421	412 aa	Known RBP	3.28	□□□□□ -1.88
TOM1	YDR457W	SET2	P46995	733 aa	Known RBP	3.28	□□□□□ -1.88
TOM1	YDR457W	HSC82	P15108	705 aa	Known RBP	3.27	□□□□□ -1.89
TOM1	YDR457W	RTF1	P53064	558 aa		3.27	□□□□□ -1.89
TOM1	YDR457W	SMC1	P32908	1225 aa		3.27	□□□□□ -1.89
TOM1	YDR457W	YMR124W	P39523	943 aa	Known RBP	3.27	□□□□□ -1.89
TOM1	YDR457W	SPT2	P06843	333 aa	Predicted RBP	3.27	□□□□□ -1.89
TOM1	YDR457W	TSR1	Q07381	788 aa	Known RBP	3.27	□□□□□ -1.89
TOM1	YDR457W	SSA2	P10592	639 aa	Known RBP	3.27	□□□□□ -1.89
TOM1	YDR457W	SMC3	P47037	1230 aa		3.26	□□□□□ -1.89
TOM1	YDR457W	BDP1	P46678	594 aa		3.26	□□□□□ -1.89
TOM1	YDR457W	RUD3	Q12234	484 aa	Known RBP	3.26	□□□□□ -1.89
TOM1	YDR457W	NCB2	Q92317	146 aa		3.26	□□□□□ -1.89
TOM1	YDR457W	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	3.26	□□□□□ -1.89	not detected
TOM1	YDR457W	RLF2	Q12495	606 aa		3.25	□□□□□ -1.89

Retrieved 100 of 5,963 RNA–protein pairs in 13.5 ms