Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
HLA-DQA1P01909 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
HLA-DQA1P01909 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HLA-DQA1P01909 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HLA-DQA1P01909 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HLA-DQA1P01909 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HLA-DQA1P01909 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HLA-DQA1P01909 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HLA-DQA1P01909 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HLA-DQA1P01909 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
HLA-DQA1P01909 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HLA-DQA1P01909 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HLA-DQA1P01909 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HLA-DQA1P01909 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC15.19■□□□□ 0.02
HLA-DQA1P01909 AC093484.2-201ENST00000580996 2166 ntBASIC15.19■□□□□ 0.02
HLA-DQA1P01909 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
HLA-DQA1P01909 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC15.19■□□□□ 0.02
HLA-DQA1P01909 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HLA-DQA1P01909 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC15.19■□□□□ 0.02
HLA-DQA1P01909 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC15.19■□□□□ 0.02
HLA-DQA1P01909 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
HLA-DQA1P01909 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HLA-DQA1P01909 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
HLA-DQA1P01909 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HLA-DQA1P01909 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC15.19■□□□□ 0.02
HLA-DQA1P01909 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC15.19■□□□□ 0.02
HLA-DQA1P01909 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
HLA-DQA1P01909 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC15.19■□□□□ 0.02
HLA-DQA1P01909 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC15.19■□□□□ 0.02
HLA-DQA1P01909 AC087239.1-201ENST00000622671 572 ntBASIC15.19■□□□□ 0.02
HLA-DQA1P01909 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC15.19■□□□□ 0.02
HLA-DQA1P01909 AL035685.1-201ENST00000636663 812 ntBASIC15.19■□□□□ 0.02
HLA-DQA1P01909 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HLA-DQA1P01909 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HLA-DQA1P01909 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HLA-DQA1P01909 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
HLA-DQA1P01909 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HLA-DQA1P01909 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC15.19■□□□□ 0.02
HLA-DQA1P01909 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HLA-DQA1P01909 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HLA-DQA1P01909 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC15.19■□□□□ 0.02
HLA-DQA1P01909 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC15.19■□□□□ 0.02
HLA-DQA1P01909 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC15.19■□□□□ 0.02
HLA-DQA1P01909 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DQA1P01909 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DQA1P01909 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DQA1P01909 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DQA1P01909 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DQA1P01909 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DQA1P01909 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DQA1P01909 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DQA1P01909 PODN-203ENST00000395871 2744 ntTSL 5 BASIC15.18■□□□□ 0.02
HLA-DQA1P01909 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC15.18■□□□□ 0.02
HLA-DQA1P01909 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DQA1P01909 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DQA1P01909 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DQA1P01909 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DQA1P01909 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DQA1P01909 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DQA1P01909 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC15.18■□□□□ 0.02
HLA-DQA1P01909 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
HLA-DQA1P01909 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DQA1P01909 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DQA1P01909 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DQA1P01909 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DQA1P01909 Z82202.1-201ENST00000623446 1880 ntBASIC15.18■□□□□ 0.02
HLA-DQA1P01909 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC15.18■□□□□ 0.02
HLA-DQA1P01909 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC15.18■□□□□ 0.02
HLA-DQA1P01909 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DQA1P01909 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HLA-DQA1P01909 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HLA-DQA1P01909 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HLA-DQA1P01909 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HLA-DQA1P01909 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HLA-DQA1P01909 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HLA-DQA1P01909 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HLA-DQA1P01909 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HLA-DQA1P01909 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HLA-DQA1P01909 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HLA-DQA1P01909 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
HLA-DQA1P01909 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC15.17■□□□□ 0.02
HLA-DQA1P01909 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
HLA-DQA1P01909 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HLA-DQA1P01909 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HLA-DQA1P01909 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HLA-DQA1P01909 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HLA-DQA1P01909 AC020916.1-201ENST00000587762 1774 ntBASIC15.17■□□□□ 0.02
HLA-DQA1P01909 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
HLA-DQA1P01909 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
HLA-DQA1P01909 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HLA-DQA1P01909 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HLA-DQA1P01909 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC15.17■□□□□ 0.02
HLA-DQA1P01909 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HLA-DQA1P01909 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC15.17■□□□□ 0.02
HLA-DQA1P01909 MIR6722-201ENST00000617286 78 ntBASIC15.17■□□□□ 0.02
HLA-DQA1P01909 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
HLA-DQA1P01909 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HLA-DQA1P01909 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HLA-DQA1P01909 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HLA-DQA1P01909 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms