Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TOP3BO95985 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TOP3BO95985 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
TOP3BO95985 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
TOP3BO95985 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
TOP3BO95985 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TOP3BO95985 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC20.67■□□□□ 0.9
TOP3BO95985 AC211429.1-201ENST00000415277 523 ntBASIC20.67■□□□□ 0.9
TOP3BO95985 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC20.67■□□□□ 0.9
TOP3BO95985 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC20.67■□□□□ 0.9
TOP3BO95985 AC097658.1-201ENST00000475555 843 ntBASIC20.67■□□□□ 0.9
TOP3BO95985 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
TOP3BO95985 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC20.67■□□□□ 0.9
TOP3BO95985 PLLP-204ENST00000569059 665 ntTSL 3 BASIC20.67■□□□□ 0.9
TOP3BO95985 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC20.67■□□□□ 0.9
TOP3BO95985 MME-217ENST00000616757 1315 ntTSL 5 BASIC20.67■□□□□ 0.9
TOP3BO95985 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC20.67■□□□□ 0.9
TOP3BO95985 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TOP3BO95985 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TOP3BO95985 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TOP3BO95985 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TOP3BO95985 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TOP3BO95985 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.67■□□□□ 0.9
TOP3BO95985 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
TOP3BO95985 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.66■□□□□ 0.9
TOP3BO95985 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TOP3BO95985 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC20.66■□□□□ 0.9
TOP3BO95985 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC20.66■□□□□ 0.9
TOP3BO95985 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC20.66■□□□□ 0.9
TOP3BO95985 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TOP3BO95985 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TOP3BO95985 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TOP3BO95985 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TOP3BO95985 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC20.66■□□□□ 0.9
TOP3BO95985 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
TOP3BO95985 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
TOP3BO95985 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC20.66■□□□□ 0.9
TOP3BO95985 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TOP3BO95985 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC20.65■□□□□ 0.9
TOP3BO95985 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC20.65■□□□□ 0.9
TOP3BO95985 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20.65■□□□□ 0.9
TOP3BO95985 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC20.65■□□□□ 0.9
TOP3BO95985 AC007225.1-201ENST00000566331 1836 ntBASIC20.65■□□□□ 0.9
TOP3BO95985 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TOP3BO95985 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
TOP3BO95985 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TOP3BO95985 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC20.65■□□□□ 0.9
TOP3BO95985 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC20.65■□□□□ 0.9
TOP3BO95985 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
TOP3BO95985 GXYLT1P3-201ENST00000453058 1193 ntBASIC20.65■□□□□ 0.9
TOP3BO95985 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TOP3BO95985 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC20.65■□□□□ 0.9
TOP3BO95985 AC073912.3-201ENST00000624414 853 ntBASIC20.65■□□□□ 0.9
TOP3BO95985 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TOP3BO95985 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TOP3BO95985 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TOP3BO95985 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
TOP3BO95985 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TOP3BO95985 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
TOP3BO95985 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
TOP3BO95985 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
TOP3BO95985 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20.64■□□□□ 0.9
TOP3BO95985 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC20.64■□□□□ 0.9
TOP3BO95985 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TOP3BO95985 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TOP3BO95985 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.64■□□□□ 0.89
TOP3BO95985 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
TOP3BO95985 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TOP3BO95985 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
TOP3BO95985 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC20.64■□□□□ 0.89
TOP3BO95985 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
TOP3BO95985 BET1L-204ENST00000410108 637 ntTSL 3 BASIC20.64■□□□□ 0.89
TOP3BO95985 AC010141.2-201ENST00000452426 721 ntBASIC20.64■□□□□ 0.89
TOP3BO95985 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC20.64■□□□□ 0.89
TOP3BO95985 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC20.64■□□□□ 0.89
TOP3BO95985 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC20.64■□□□□ 0.89
TOP3BO95985 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC20.64■□□□□ 0.89
TOP3BO95985 OR10C1-204ENST00000622521 1039 ntBASIC20.64■□□□□ 0.89
TOP3BO95985 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.64■□□□□ 0.89
TOP3BO95985 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TOP3BO95985 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
TOP3BO95985 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC20.64■□□□□ 0.89
TOP3BO95985 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC20.64■□□□□ 0.89
TOP3BO95985 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
TOP3BO95985 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
TOP3BO95985 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
TOP3BO95985 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TOP3BO95985 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
TOP3BO95985 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TOP3BO95985 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TOP3BO95985 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.63■□□□□ 0.89
TOP3BO95985 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.63■□□□□ 0.89
TOP3BO95985 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.63■□□□□ 0.89
TOP3BO95985 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
TOP3BO95985 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC20.63■□□□□ 0.89
TOP3BO95985 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TOP3BO95985 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC20.63■□□□□ 0.89
TOP3BO95985 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
TOP3BO95985 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
TOP3BO95985 INO80E-214ENST00000620599 515 ntTSL 2 BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms