Protein–RNA interactions for Protein: O43353

RIPK2, Receptor-interacting serine/threonine-protein kinase 2, humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK2O43353 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
RIPK2O43353 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RIPK2O43353 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC20.52■□□□□ 0.88
RIPK2O43353 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RIPK2O43353 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RIPK2O43353 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RIPK2O43353 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RIPK2O43353 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
RIPK2O43353 NAA20-201ENST00000310450 920 ntTSL 2 BASIC20.52■□□□□ 0.88
RIPK2O43353 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC20.52■□□□□ 0.88
RIPK2O43353 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC20.52■□□□□ 0.88
RIPK2O43353 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RIPK2O43353 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RIPK2O43353 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
RIPK2O43353 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
RIPK2O43353 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
RIPK2O43353 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RIPK2O43353 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RIPK2O43353 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC20.51■□□□□ 0.87
RIPK2O43353 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC20.51■□□□□ 0.87
RIPK2O43353 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC20.51■□□□□ 0.87
RIPK2O43353 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RIPK2O43353 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RIPK2O43353 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RIPK2O43353 SERP1-208ENST00000491660 830 ntTSL 2 BASIC20.51■□□□□ 0.87
RIPK2O43353 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC20.51■□□□□ 0.87
RIPK2O43353 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC20.51■□□□□ 0.87
RIPK2O43353 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC20.51■□□□□ 0.87
RIPK2O43353 GRAMD4P4-201ENST00000613563 1115 ntBASIC20.51■□□□□ 0.87
RIPK2O43353 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
RIPK2O43353 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
RIPK2O43353 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
RIPK2O43353 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
RIPK2O43353 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC20.51■□□□□ 0.87
RIPK2O43353 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
RIPK2O43353 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RIPK2O43353 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
RIPK2O43353 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RIPK2O43353 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RIPK2O43353 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC20.5■□□□□ 0.87
RIPK2O43353 AP001330.3-201ENST00000520123 633 ntBASIC20.5■□□□□ 0.87
RIPK2O43353 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC20.5■□□□□ 0.87
RIPK2O43353 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC20.5■□□□□ 0.87
RIPK2O43353 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
RIPK2O43353 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
RIPK2O43353 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RIPK2O43353 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RIPK2O43353 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RIPK2O43353 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RIPK2O43353 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RIPK2O43353 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC20.49■□□□□ 0.87
RIPK2O43353 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC20.49■□□□□ 0.87
RIPK2O43353 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RIPK2O43353 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RIPK2O43353 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC20.49■□□□□ 0.87
RIPK2O43353 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RIPK2O43353 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC20.49■□□□□ 0.87
RIPK2O43353 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RIPK2O43353 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RIPK2O43353 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
RIPK2O43353 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC20.49■□□□□ 0.87
RIPK2O43353 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RIPK2O43353 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC20.49■□□□□ 0.87
RIPK2O43353 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC20.49■□□□□ 0.87
RIPK2O43353 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RIPK2O43353 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
RIPK2O43353 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
RIPK2O43353 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RIPK2O43353 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RIPK2O43353 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
RIPK2O43353 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
RIPK2O43353 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
RIPK2O43353 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RIPK2O43353 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC20.48■□□□□ 0.87
RIPK2O43353 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
RIPK2O43353 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RIPK2O43353 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC20.48■□□□□ 0.87
RIPK2O43353 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
RIPK2O43353 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RIPK2O43353 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.48■□□□□ 0.87
RIPK2O43353 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
RIPK2O43353 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RIPK2O43353 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC20.48■□□□□ 0.87
RIPK2O43353 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC20.48■□□□□ 0.87
RIPK2O43353 AC079140.4-201ENST00000507448 529 ntBASIC20.48■□□□□ 0.87
RIPK2O43353 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC20.48■□□□□ 0.87
RIPK2O43353 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC20.48■□□□□ 0.87
RIPK2O43353 AC120498.10-201ENST00000621827 505 ntBASIC20.48■□□□□ 0.87
RIPK2O43353 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC20.48■□□□□ 0.87
RIPK2O43353 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RIPK2O43353 PWWP2AP1-201ENST00000429776 2273 ntBASIC20.48■□□□□ 0.87
RIPK2O43353 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC20.48■□□□□ 0.87
RIPK2O43353 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RIPK2O43353 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RIPK2O43353 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
RIPK2O43353 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC20.48■□□□□ 0.87
RIPK2O43353 CD37-204ENST00000535669 1674 ntTSL 2 BASIC20.48■□□□□ 0.87
RIPK2O43353 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC20.48■□□□□ 0.87
RIPK2O43353 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RIPK2O43353 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms