Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
CLRN3Q8NCR9 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLRN3Q8NCR9 AC124067.4-201ENST00000519691 2379 ntBASIC16.19■□□□□ 0.18
CLRN3Q8NCR9 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLRN3Q8NCR9 COMP-202ENST00000425807 2292 ntTSL 2 BASIC16.19■□□□□ 0.18
CLRN3Q8NCR9 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CLRN3Q8NCR9 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
CLRN3Q8NCR9 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC16.18■□□□□ 0.18
CLRN3Q8NCR9 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
CLRN3Q8NCR9 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CLRN3Q8NCR9 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CLRN3Q8NCR9 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CLRN3Q8NCR9 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
CLRN3Q8NCR9 AC009053.2-201ENST00000563701 2365 ntBASIC16.18■□□□□ 0.18
CLRN3Q8NCR9 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC16.18■□□□□ 0.18
CLRN3Q8NCR9 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
CLRN3Q8NCR9 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CLRN3Q8NCR9 AC060814.1-201ENST00000554326 538 ntBASIC16.18■□□□□ 0.18
CLRN3Q8NCR9 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CLRN3Q8NCR9 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CLRN3Q8NCR9 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC16.18■□□□□ 0.18
CLRN3Q8NCR9 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC16.18■□□□□ 0.18
CLRN3Q8NCR9 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC16.18■□□□□ 0.18
CLRN3Q8NCR9 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC16.18■□□□□ 0.18
CLRN3Q8NCR9 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC16.18■□□□□ 0.18
CLRN3Q8NCR9 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CLRN3Q8NCR9 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CLRN3Q8NCR9 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
CLRN3Q8NCR9 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CLRN3Q8NCR9 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CLRN3Q8NCR9 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
CLRN3Q8NCR9 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CLRN3Q8NCR9 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC16.17■□□□□ 0.18
CLRN3Q8NCR9 AL356309.3-201ENST00000624132 1934 ntBASIC16.17■□□□□ 0.18
CLRN3Q8NCR9 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CLRN3Q8NCR9 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC16.17■□□□□ 0.18
CLRN3Q8NCR9 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CLRN3Q8NCR9 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CLRN3Q8NCR9 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
CLRN3Q8NCR9 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CLRN3Q8NCR9 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CLRN3Q8NCR9 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CLRN3Q8NCR9 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
CLRN3Q8NCR9 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
CLRN3Q8NCR9 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC16.17■□□□□ 0.18
CLRN3Q8NCR9 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
CLRN3Q8NCR9 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC16.17■□□□□ 0.18
CLRN3Q8NCR9 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CLRN3Q8NCR9 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CLRN3Q8NCR9 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CLRN3Q8NCR9 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC16.17■□□□□ 0.18
CLRN3Q8NCR9 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
CLRN3Q8NCR9 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC16.17■□□□□ 0.18
CLRN3Q8NCR9 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CLRN3Q8NCR9 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
CLRN3Q8NCR9 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
CLRN3Q8NCR9 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLRN3Q8NCR9 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC16.16■□□□□ 0.18
CLRN3Q8NCR9 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC16.16■□□□□ 0.18
CLRN3Q8NCR9 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
CLRN3Q8NCR9 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
CLRN3Q8NCR9 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC16.16■□□□□ 0.18
CLRN3Q8NCR9 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLRN3Q8NCR9 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
CLRN3Q8NCR9 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC16.16■□□□□ 0.18
CLRN3Q8NCR9 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLRN3Q8NCR9 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLRN3Q8NCR9 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
CLRN3Q8NCR9 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CLRN3Q8NCR9 HCG11-201ENST00000411553 5696 ntBASIC16.16■□□□□ 0.18
CLRN3Q8NCR9 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLRN3Q8NCR9 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLRN3Q8NCR9 AC121338.2-201ENST00000622535 1744 ntBASIC16.16■□□□□ 0.18
CLRN3Q8NCR9 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CLRN3Q8NCR9 REST-210ENST00000638187 1334 ntTSL 5 BASIC16.16■□□□□ 0.18
CLRN3Q8NCR9 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLRN3Q8NCR9 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLRN3Q8NCR9 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLRN3Q8NCR9 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLRN3Q8NCR9 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
CLRN3Q8NCR9 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLRN3Q8NCR9 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLRN3Q8NCR9 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CLRN3Q8NCR9 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLRN3Q8NCR9 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CLRN3Q8NCR9 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CLRN3Q8NCR9 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLRN3Q8NCR9 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
CLRN3Q8NCR9 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
CLRN3Q8NCR9 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CLRN3Q8NCR9 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CLRN3Q8NCR9 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CLRN3Q8NCR9 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLRN3Q8NCR9 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLRN3Q8NCR9 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CLRN3Q8NCR9 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CLRN3Q8NCR9 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLRN3Q8NCR9 AC068880.1-201ENST00000507289 2297 ntBASIC16.15■□□□□ 0.18
CLRN3Q8NCR9 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
CLRN3Q8NCR9 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC16.14■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms