Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RFX4Q33E94 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RFX4Q33E94 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
RFX4Q33E94 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RFX4Q33E94 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RFX4Q33E94 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC18.81■□□□□ 0.6
RFX4Q33E94 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC18.81■□□□□ 0.6
RFX4Q33E94 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RFX4Q33E94 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC18.8■□□□□ 0.6
RFX4Q33E94 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC18.8■□□□□ 0.6
RFX4Q33E94 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
RFX4Q33E94 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC18.8■□□□□ 0.6
RFX4Q33E94 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC18.8■□□□□ 0.6
RFX4Q33E94 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RFX4Q33E94 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RFX4Q33E94 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RFX4Q33E94 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC18.8■□□□□ 0.6
RFX4Q33E94 AP001330.3-201ENST00000520123 633 ntBASIC18.8■□□□□ 0.6
RFX4Q33E94 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC18.8■□□□□ 0.6
RFX4Q33E94 AL158211.5-201ENST00000623583 2518 ntBASIC18.8■□□□□ 0.6
RFX4Q33E94 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RFX4Q33E94 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.8■□□□□ 0.6
RFX4Q33E94 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RFX4Q33E94 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RFX4Q33E94 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RFX4Q33E94 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RFX4Q33E94 LBX2-AS1-202ENST00000603175 2083 ntBASIC18.8■□□□□ 0.6
RFX4Q33E94 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RFX4Q33E94 RASA4CP-201ENST00000424092 1398 ntBASIC18.8■□□□□ 0.6
RFX4Q33E94 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC18.8■□□□□ 0.6
RFX4Q33E94 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RFX4Q33E94 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC18.79■□□□□ 0.6
RFX4Q33E94 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
RFX4Q33E94 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC18.79■□□□□ 0.6
RFX4Q33E94 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC18.79■□□□□ 0.6
RFX4Q33E94 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC18.79■□□□□ 0.6
RFX4Q33E94 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC18.79■□□□□ 0.6
RFX4Q33E94 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC18.79■□□□□ 0.6
RFX4Q33E94 AL355001.2-201ENST00000620617 1191 ntBASIC18.79■□□□□ 0.6
RFX4Q33E94 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC18.79■□□□□ 0.6
RFX4Q33E94 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
RFX4Q33E94 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RFX4Q33E94 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RFX4Q33E94 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RFX4Q33E94 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC18.79■□□□□ 0.6
RFX4Q33E94 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RFX4Q33E94 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC18.79■□□□□ 0.6
RFX4Q33E94 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC18.79■□□□□ 0.6
RFX4Q33E94 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC18.78■□□□□ 0.6
RFX4Q33E94 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RFX4Q33E94 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RFX4Q33E94 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC18.78■□□□□ 0.6
RFX4Q33E94 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC18.78■□□□□ 0.6
RFX4Q33E94 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RFX4Q33E94 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC18.78■□□□□ 0.6
RFX4Q33E94 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC18.78■□□□□ 0.6
RFX4Q33E94 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC18.78■□□□□ 0.6
RFX4Q33E94 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RFX4Q33E94 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
RFX4Q33E94 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC18.78■□□□□ 0.6
RFX4Q33E94 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RFX4Q33E94 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RFX4Q33E94 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC18.78■□□□□ 0.6
RFX4Q33E94 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC18.78■□□□□ 0.6
RFX4Q33E94 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
RFX4Q33E94 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RFX4Q33E94 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RFX4Q33E94 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
RFX4Q33E94 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RFX4Q33E94 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC18.77■□□□□ 0.6
RFX4Q33E94 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
RFX4Q33E94 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RFX4Q33E94 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RFX4Q33E94 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
RFX4Q33E94 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
RFX4Q33E94 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RFX4Q33E94 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC18.77■□□□□ 0.6
RFX4Q33E94 EEF1DP3-203ENST00000566025 782 ntBASIC18.77■□□□□ 0.6
RFX4Q33E94 AC053503.5-201ENST00000601508 636 ntBASIC18.77■□□□□ 0.6
RFX4Q33E94 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RFX4Q33E94 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
RFX4Q33E94 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC18.77■□□□□ 0.6
RFX4Q33E94 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC18.77■□□□□ 0.6
RFX4Q33E94 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
RFX4Q33E94 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC18.77■□□□□ 0.59
RFX4Q33E94 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
RFX4Q33E94 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
RFX4Q33E94 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
RFX4Q33E94 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RFX4Q33E94 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RFX4Q33E94 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RFX4Q33E94 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
RFX4Q33E94 MIR939-201ENST00000401314 82 ntBASIC18.76■□□□□ 0.59
RFX4Q33E94 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC18.76■□□□□ 0.59
RFX4Q33E94 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RFX4Q33E94 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RFX4Q33E94 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RFX4Q33E94 AP004607.4-201ENST00000530158 1459 ntBASIC18.76■□□□□ 0.59
RFX4Q33E94 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RFX4Q33E94 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms