Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL28A1Q2UY09 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL28A1Q2UY09 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
COL28A1Q2UY09 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC19.47■□□□□ 0.71
COL28A1Q2UY09 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
COL28A1Q2UY09 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC19.47■□□□□ 0.71
COL28A1Q2UY09 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
COL28A1Q2UY09 SERF2-207ENST00000409614 582 ntTSL 2 BASIC19.47■□□□□ 0.71
COL28A1Q2UY09 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC19.47■□□□□ 0.71
COL28A1Q2UY09 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC19.47■□□□□ 0.71
COL28A1Q2UY09 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
COL28A1Q2UY09 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
COL28A1Q2UY09 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL28A1Q2UY09 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL28A1Q2UY09 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL28A1Q2UY09 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
COL28A1Q2UY09 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
COL28A1Q2UY09 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL28A1Q2UY09 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
COL28A1Q2UY09 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL28A1Q2UY09 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL28A1Q2UY09 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL28A1Q2UY09 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL28A1Q2UY09 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL28A1Q2UY09 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL28A1Q2UY09 MMP23A-201ENST00000234610 1017 ntBASIC19.46■□□□□ 0.71
COL28A1Q2UY09 AC239809.2-201ENST00000415381 517 ntBASIC19.46■□□□□ 0.71
COL28A1Q2UY09 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC19.46■□□□□ 0.71
COL28A1Q2UY09 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.46■□□□□ 0.71
COL28A1Q2UY09 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC19.46■□□□□ 0.71
COL28A1Q2UY09 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC19.46■□□□□ 0.71
COL28A1Q2UY09 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC19.46■□□□□ 0.71
COL28A1Q2UY09 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL28A1Q2UY09 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL28A1Q2UY09 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
COL28A1Q2UY09 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL28A1Q2UY09 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL28A1Q2UY09 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL28A1Q2UY09 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL28A1Q2UY09 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC19.45■□□□□ 0.7
COL28A1Q2UY09 AL137060.1-201ENST00000618151 2648 ntBASIC19.45■□□□□ 0.7
COL28A1Q2UY09 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL28A1Q2UY09 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL28A1Q2UY09 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC19.45■□□□□ 0.7
COL28A1Q2UY09 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL28A1Q2UY09 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL28A1Q2UY09 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL28A1Q2UY09 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC19.45■□□□□ 0.7
COL28A1Q2UY09 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL28A1Q2UY09 TPM4P1-201ENST00000436100 807 ntBASIC19.45■□□□□ 0.7
COL28A1Q2UY09 AC133681.1-201ENST00000465482 601 ntBASIC19.45■□□□□ 0.7
COL28A1Q2UY09 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC19.45■□□□□ 0.7
COL28A1Q2UY09 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
COL28A1Q2UY09 MTDHP1-201ENST00000605323 784 ntBASIC19.45■□□□□ 0.7
COL28A1Q2UY09 AC005363.2-201ENST00000618631 242 ntBASIC19.45■□□□□ 0.7
COL28A1Q2UY09 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC19.45■□□□□ 0.7
COL28A1Q2UY09 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
COL28A1Q2UY09 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL28A1Q2UY09 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL28A1Q2UY09 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC19.44■□□□□ 0.7
COL28A1Q2UY09 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL28A1Q2UY09 AC005521.1-201ENST00000393351 872 ntBASIC19.44■□□□□ 0.7
COL28A1Q2UY09 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
COL28A1Q2UY09 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC19.44■□□□□ 0.7
COL28A1Q2UY09 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
COL28A1Q2UY09 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC19.44■□□□□ 0.7
COL28A1Q2UY09 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL28A1Q2UY09 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
COL28A1Q2UY09 USF2-205ENST00000594064 1179 ntTSL 2 BASIC19.44■□□□□ 0.7
COL28A1Q2UY09 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC19.44■□□□□ 0.7
COL28A1Q2UY09 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
COL28A1Q2UY09 AC010542.4-201ENST00000563151 1910 ntBASIC19.44■□□□□ 0.7
COL28A1Q2UY09 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL28A1Q2UY09 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC19.44■□□□□ 0.7
COL28A1Q2UY09 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC19.44■□□□□ 0.7
COL28A1Q2UY09 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC19.44■□□□□ 0.7
COL28A1Q2UY09 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL28A1Q2UY09 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL28A1Q2UY09 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL28A1Q2UY09 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC19.43■□□□□ 0.7
COL28A1Q2UY09 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL28A1Q2UY09 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL28A1Q2UY09 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
COL28A1Q2UY09 ME2-206ENST00000638410 2289 ntTSL 5 BASIC19.43■□□□□ 0.7
COL28A1Q2UY09 ME2-210ENST00000639255 2262 ntTSL 5 BASIC19.43■□□□□ 0.7
COL28A1Q2UY09 AC003102.1-202ENST00000563394 1796 ntBASIC19.43■□□□□ 0.7
COL28A1Q2UY09 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL28A1Q2UY09 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL28A1Q2UY09 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL28A1Q2UY09 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC19.43■□□□□ 0.7
COL28A1Q2UY09 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
COL28A1Q2UY09 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC19.43■□□□□ 0.7
COL28A1Q2UY09 AC100791.3-201ENST00000617619 330 ntBASIC19.43■□□□□ 0.7
COL28A1Q2UY09 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
COL28A1Q2UY09 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL28A1Q2UY09 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL28A1Q2UY09 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC19.43■□□□□ 0.7
COL28A1Q2UY09 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC19.42■□□□□ 0.7
COL28A1Q2UY09 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL28A1Q2UY09 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms