Protein–RNA interactions for Protein: Q2NKJ3

CTC1, CST complex subunit CTC1, humanhuman

Predictions only

Length 1,217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTC1Q2NKJ3 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC21.73■■□□□ 1.07
CTC1Q2NKJ3 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC21.73■■□□□ 1.07
CTC1Q2NKJ3 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC21.73■■□□□ 1.07
CTC1Q2NKJ3 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
CTC1Q2NKJ3 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CTC1Q2NKJ3 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC21.73■■□□□ 1.07
CTC1Q2NKJ3 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CTC1Q2NKJ3 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CTC1Q2NKJ3 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
CTC1Q2NKJ3 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC21.72■■□□□ 1.07
CTC1Q2NKJ3 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CTC1Q2NKJ3 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
CTC1Q2NKJ3 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
CTC1Q2NKJ3 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
CTC1Q2NKJ3 GGT1-206ENST00000404223 952 ntTSL 2 BASIC21.72■■□□□ 1.07
CTC1Q2NKJ3 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CTC1Q2NKJ3 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
CTC1Q2NKJ3 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC21.72■■□□□ 1.07
CTC1Q2NKJ3 PRKY-204ENST00000533551 1019 ntBASIC21.72■■□□□ 1.07
CTC1Q2NKJ3 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC21.72■■□□□ 1.07
CTC1Q2NKJ3 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC21.72■■□□□ 1.07
CTC1Q2NKJ3 AL353708.3-201ENST00000610272 989 ntBASIC21.72■■□□□ 1.07
CTC1Q2NKJ3 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CTC1Q2NKJ3 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CTC1Q2NKJ3 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CTC1Q2NKJ3 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
CTC1Q2NKJ3 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
CTC1Q2NKJ3 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CTC1Q2NKJ3 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CTC1Q2NKJ3 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC21.72■■□□□ 1.07
CTC1Q2NKJ3 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CTC1Q2NKJ3 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CTC1Q2NKJ3 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CTC1Q2NKJ3 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CTC1Q2NKJ3 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
CTC1Q2NKJ3 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CTC1Q2NKJ3 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
CTC1Q2NKJ3 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CTC1Q2NKJ3 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
CTC1Q2NKJ3 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CTC1Q2NKJ3 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CTC1Q2NKJ3 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC21.71■■□□□ 1.07
CTC1Q2NKJ3 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC21.71■■□□□ 1.07
CTC1Q2NKJ3 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CTC1Q2NKJ3 TMPOP1-202ENST00000424642 1267 ntBASIC21.71■■□□□ 1.07
CTC1Q2NKJ3 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC21.71■■□□□ 1.07
CTC1Q2NKJ3 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
CTC1Q2NKJ3 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CTC1Q2NKJ3 KRT18P35-201ENST00000510488 1269 ntBASIC21.71■■□□□ 1.07
CTC1Q2NKJ3 PENK-204ENST00000518770 863 ntTSL 2 BASIC21.71■■□□□ 1.07
CTC1Q2NKJ3 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC21.71■■□□□ 1.07
CTC1Q2NKJ3 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC21.71■■□□□ 1.07
CTC1Q2NKJ3 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC21.71■■□□□ 1.07
CTC1Q2NKJ3 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CTC1Q2NKJ3 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC21.71■■□□□ 1.07
CTC1Q2NKJ3 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CTC1Q2NKJ3 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CTC1Q2NKJ3 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CTC1Q2NKJ3 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CTC1Q2NKJ3 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC21.71■■□□□ 1.07
CTC1Q2NKJ3 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC21.71■■□□□ 1.07
CTC1Q2NKJ3 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
CTC1Q2NKJ3 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
CTC1Q2NKJ3 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
CTC1Q2NKJ3 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
CTC1Q2NKJ3 KRASP1-201ENST00000407852 552 ntBASIC21.7■■□□□ 1.06
CTC1Q2NKJ3 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CTC1Q2NKJ3 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC21.7■■□□□ 1.06
CTC1Q2NKJ3 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
CTC1Q2NKJ3 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC21.7■■□□□ 1.06
CTC1Q2NKJ3 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
CTC1Q2NKJ3 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
CTC1Q2NKJ3 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CTC1Q2NKJ3 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
CTC1Q2NKJ3 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CTC1Q2NKJ3 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CTC1Q2NKJ3 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC21.69■■□□□ 1.06
CTC1Q2NKJ3 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC21.69■■□□□ 1.06
CTC1Q2NKJ3 RN7SL850P-201ENST00000579959 291 ntBASIC21.69■■□□□ 1.06
CTC1Q2NKJ3 NT5C-211ENST00000582170 653 ntTSL 3 BASIC21.69■■□□□ 1.06
CTC1Q2NKJ3 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CTC1Q2NKJ3 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CTC1Q2NKJ3 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
CTC1Q2NKJ3 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CTC1Q2NKJ3 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC21.69■■□□□ 1.06
CTC1Q2NKJ3 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CTC1Q2NKJ3 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
CTC1Q2NKJ3 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CTC1Q2NKJ3 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CTC1Q2NKJ3 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CTC1Q2NKJ3 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
CTC1Q2NKJ3 AC005829.2-201ENST00000571422 1056 ntBASIC21.68■■□□□ 1.06
CTC1Q2NKJ3 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
CTC1Q2NKJ3 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CTC1Q2NKJ3 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CTC1Q2NKJ3 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CTC1Q2NKJ3 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CTC1Q2NKJ3 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC21.68■■□□□ 1.06
CTC1Q2NKJ3 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CTC1Q2NKJ3 FAM99A-202ENST00000538190 1989 ntBASIC21.68■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms