Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RPL39P62891 AC061975.6-201ENST00000579045 1553 ntBASIC14.3□□□□□ -0.12
RPL39P62891 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC14.3□□□□□ -0.12
RPL39P62891 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC14.3□□□□□ -0.12
RPL39P62891 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
RPL39P62891 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC14.29□□□□□ -0.12
RPL39P62891 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
RPL39P62891 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
RPL39P62891 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RPL39P62891 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RPL39P62891 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
RPL39P62891 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
RPL39P62891 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
RPL39P62891 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC14.29□□□□□ -0.12
RPL39P62891 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
RPL39P62891 AC133561.4-201ENST00000566112 224 ntBASIC14.29□□□□□ -0.12
RPL39P62891 SRR-208ENST00000576848 588 ntTSL 4 BASIC14.29□□□□□ -0.12
RPL39P62891 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC14.29□□□□□ -0.12
RPL39P62891 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
RPL39P62891 SF1-220ENST00000626028 704 ntTSL 2 BASIC14.29□□□□□ -0.12
RPL39P62891 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RPL39P62891 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC14.29□□□□□ -0.12
RPL39P62891 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
RPL39P62891 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RPL39P62891 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
RPL39P62891 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
RPL39P62891 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC14.29□□□□□ -0.12
RPL39P62891 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RPL39P62891 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC14.29□□□□□ -0.12
RPL39P62891 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
RPL39P62891 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RPL39P62891 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
RPL39P62891 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
RPL39P62891 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
RPL39P62891 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RPL39P62891 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RPL39P62891 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
RPL39P62891 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC14.28□□□□□ -0.12
RPL39P62891 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RPL39P62891 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RPL39P62891 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RPL39P62891 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
RPL39P62891 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
RPL39P62891 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RPL39P62891 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RPL39P62891 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC14.28□□□□□ -0.12
RPL39P62891 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
RPL39P62891 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
RPL39P62891 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC14.28□□□□□ -0.12
RPL39P62891 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC14.28□□□□□ -0.12
RPL39P62891 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
RPL39P62891 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC14.28□□□□□ -0.12
RPL39P62891 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
RPL39P62891 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
RPL39P62891 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
RPL39P62891 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC14.27□□□□□ -0.12
RPL39P62891 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
RPL39P62891 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.12
RPL39P62891 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
RPL39P62891 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
RPL39P62891 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC14.27□□□□□ -0.12
RPL39P62891 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC14.27□□□□□ -0.12
RPL39P62891 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC14.27□□□□□ -0.12
RPL39P62891 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
RPL39P62891 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC14.27□□□□□ -0.12
RPL39P62891 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
RPL39P62891 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
RPL39P62891 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC14.27□□□□□ -0.12
RPL39P62891 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RPL39P62891 PTMA-205ENST00000410064 814 ntTSL 2 BASIC14.27□□□□□ -0.13
RPL39P62891 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC14.27□□□□□ -0.13
RPL39P62891 MIR4466-201ENST00000606121 54 ntBASIC14.27□□□□□ -0.13
RPL39P62891 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RPL39P62891 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC14.27□□□□□ -0.13
RPL39P62891 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RPL39P62891 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC14.27□□□□□ -0.13
RPL39P62891 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC14.27□□□□□ -0.13
RPL39P62891 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
RPL39P62891 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
RPL39P62891 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
RPL39P62891 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RPL39P62891 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RPL39P62891 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
RPL39P62891 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
RPL39P62891 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
RPL39P62891 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RPL39P62891 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
RPL39P62891 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
RPL39P62891 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
RPL39P62891 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC14.26□□□□□ -0.13
RPL39P62891 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC14.26□□□□□ -0.13
RPL39P62891 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RPL39P62891 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RPL39P62891 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
RPL39P62891 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
RPL39P62891 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RPL39P62891 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RPL39P62891 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC14.26□□□□□ -0.13
RPL39P62891 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RPL39P62891 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms