Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HOXC4P09017 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
HOXC4P09017 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC19.87■□□□□ 0.77
HOXC4P09017 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HOXC4P09017 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
HOXC4P09017 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC19.86■□□□□ 0.77
HOXC4P09017 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
HOXC4P09017 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
HOXC4P09017 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC19.86■□□□□ 0.77
HOXC4P09017 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
HOXC4P09017 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
HOXC4P09017 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
HOXC4P09017 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
HOXC4P09017 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC19.86■□□□□ 0.77
HOXC4P09017 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC19.86■□□□□ 0.77
HOXC4P09017 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC19.86■□□□□ 0.77
HOXC4P09017 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HOXC4P09017 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC19.86■□□□□ 0.77
HOXC4P09017 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
HOXC4P09017 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HOXC4P09017 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC19.86■□□□□ 0.77
HOXC4P09017 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
HOXC4P09017 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HOXC4P09017 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC19.85■□□□□ 0.77
HOXC4P09017 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
HOXC4P09017 PTBP1P-201ENST00000554374 1601 ntBASIC19.85■□□□□ 0.77
HOXC4P09017 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
HOXC4P09017 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC19.85■□□□□ 0.77
HOXC4P09017 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
HOXC4P09017 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC19.85■□□□□ 0.77
HOXC4P09017 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC19.85■□□□□ 0.77
HOXC4P09017 DET1-205ENST00000558413 583 ntTSL 4 BASIC19.85■□□□□ 0.77
HOXC4P09017 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC19.85■□□□□ 0.77
HOXC4P09017 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
HOXC4P09017 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
HOXC4P09017 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC19.85■□□□□ 0.77
HOXC4P09017 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC19.85■□□□□ 0.77
HOXC4P09017 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HOXC4P09017 AL121603.2-201ENST00000557373 2117 ntBASIC19.85■□□□□ 0.77
HOXC4P09017 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
HOXC4P09017 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
HOXC4P09017 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
HOXC4P09017 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
HOXC4P09017 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC19.84■□□□□ 0.77
HOXC4P09017 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
HOXC4P09017 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
HOXC4P09017 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC19.84■□□□□ 0.77
HOXC4P09017 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC19.84■□□□□ 0.77
HOXC4P09017 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
HOXC4P09017 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
HOXC4P09017 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
HOXC4P09017 HLA-G-202ENST00000376815 851 ntBASIC19.84■□□□□ 0.77
HOXC4P09017 HLA-G-203ENST00000376818 1127 ntBASIC19.84■□□□□ 0.77
HOXC4P09017 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
HOXC4P09017 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC19.84■□□□□ 0.77
HOXC4P09017 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
HOXC4P09017 AC133681.1-201ENST00000465482 601 ntBASIC19.84■□□□□ 0.77
HOXC4P09017 THEM4-205ENST00000489410 643 ntTSL 2 BASIC19.84■□□□□ 0.77
HOXC4P09017 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC19.84■□□□□ 0.77
HOXC4P09017 C1QBPP2-201ENST00000528754 825 ntBASIC19.84■□□□□ 0.77
HOXC4P09017 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC19.84■□□□□ 0.77
HOXC4P09017 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC19.84■□□□□ 0.77
HOXC4P09017 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC19.84■□□□□ 0.77
HOXC4P09017 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC19.84■□□□□ 0.77
HOXC4P09017 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.84■□□□□ 0.77
HOXC4P09017 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19.84■□□□□ 0.77
HOXC4P09017 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
HOXC4P09017 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC19.84■□□□□ 0.77
HOXC4P09017 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC19.84■□□□□ 0.77
HOXC4P09017 AC007225.1-201ENST00000566331 1836 ntBASIC19.83■□□□□ 0.77
HOXC4P09017 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
HOXC4P09017 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC19.83■□□□□ 0.77
HOXC4P09017 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
HOXC4P09017 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
HOXC4P09017 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
HOXC4P09017 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
HOXC4P09017 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC19.83■□□□□ 0.77
HOXC4P09017 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC19.83■□□□□ 0.77
HOXC4P09017 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC19.83■□□□□ 0.77
HOXC4P09017 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC19.83■□□□□ 0.77
HOXC4P09017 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC19.83■□□□□ 0.77
HOXC4P09017 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC19.83■□□□□ 0.77
HOXC4P09017 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC19.83■□□□□ 0.77
HOXC4P09017 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
HOXC4P09017 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
HOXC4P09017 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.83■□□□□ 0.76
HOXC4P09017 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
HOXC4P09017 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
HOXC4P09017 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
HOXC4P09017 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
HOXC4P09017 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.76
HOXC4P09017 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
HOXC4P09017 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
HOXC4P09017 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
HOXC4P09017 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
HOXC4P09017 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC19.82■□□□□ 0.76
HOXC4P09017 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
HOXC4P09017 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HOXC4P09017 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
HOXC4P09017 ISG20-202ENST00000379224 540 ntTSL 3 BASIC19.82■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms