Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
VIMP08670 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VIMP08670 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
VIMP08670 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC20.32■□□□□ 0.84
VIMP08670 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VIMP08670 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
VIMP08670 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
VIMP08670 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VIMP08670 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC20.32■□□□□ 0.84
VIMP08670 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20.32■□□□□ 0.84
VIMP08670 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC20.32■□□□□ 0.84
VIMP08670 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC20.32■□□□□ 0.84
VIMP08670 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
VIMP08670 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VIMP08670 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
VIMP08670 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC20.31■□□□□ 0.84
VIMP08670 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
VIMP08670 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
VIMP08670 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
VIMP08670 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VIMP08670 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
VIMP08670 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC20.31■□□□□ 0.84
VIMP08670 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC20.31■□□□□ 0.84
VIMP08670 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VIMP08670 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VIMP08670 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
VIMP08670 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
VIMP08670 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
VIMP08670 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC20.31■□□□□ 0.84
VIMP08670 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
VIMP08670 NEFHP1-201ENST00000412845 2629 ntBASIC20.31■□□□□ 0.84
VIMP08670 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
VIMP08670 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC20.31■□□□□ 0.84
VIMP08670 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
VIMP08670 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC20.31■□□□□ 0.84
VIMP08670 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
VIMP08670 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
VIMP08670 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC20.31■□□□□ 0.84
VIMP08670 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
VIMP08670 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VIMP08670 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC20.31■□□□□ 0.84
VIMP08670 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VIMP08670 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
VIMP08670 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
VIMP08670 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC20.3■□□□□ 0.84
VIMP08670 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VIMP08670 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC20.3■□□□□ 0.84
VIMP08670 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
VIMP08670 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
VIMP08670 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC20.3■□□□□ 0.84
VIMP08670 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC20.3■□□□□ 0.84
VIMP08670 LETM1P2-201ENST00000597330 2178 ntBASIC20.3■□□□□ 0.84
VIMP08670 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VIMP08670 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC20.3■□□□□ 0.84
VIMP08670 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
VIMP08670 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
VIMP08670 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
VIMP08670 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VIMP08670 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
VIMP08670 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC20.3■□□□□ 0.84
VIMP08670 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
VIMP08670 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VIMP08670 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VIMP08670 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VIMP08670 POLI-202ENST00000406285 2030 ntTSL 2 BASIC20.29■□□□□ 0.84
VIMP08670 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VIMP08670 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
VIMP08670 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
VIMP08670 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC20.29■□□□□ 0.84
VIMP08670 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VIMP08670 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC20.29■□□□□ 0.84
VIMP08670 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VIMP08670 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
VIMP08670 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VIMP08670 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC20.29■□□□□ 0.84
VIMP08670 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC20.29■□□□□ 0.84
VIMP08670 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VIMP08670 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VIMP08670 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
VIMP08670 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
VIMP08670 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC20.28■□□□□ 0.84
VIMP08670 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
VIMP08670 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC20.28■□□□□ 0.84
VIMP08670 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC20.28■□□□□ 0.84
VIMP08670 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VIMP08670 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VIMP08670 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC20.28■□□□□ 0.84
VIMP08670 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
VIMP08670 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
VIMP08670 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
VIMP08670 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VIMP08670 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VIMP08670 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
VIMP08670 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC20.28■□□□□ 0.84
VIMP08670 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VIMP08670 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VIMP08670 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
VIMP08670 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC20.28■□□□□ 0.84
VIMP08670 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC20.28■□□□□ 0.84
VIMP08670 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 84.6 ms