Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC30.72■■■□□ 2.51
RAPGEF3O95398 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
RAPGEF3O95398 AC027702.1-201ENST00000563810 1770 ntBASIC30.71■■■□□ 2.51
RAPGEF3O95398 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC30.71■■■□□ 2.51
RAPGEF3O95398 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC30.71■■■□□ 2.51
RAPGEF3O95398 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
RAPGEF3O95398 STK25-205ENST00000405883 1904 ntTSL 2 BASIC30.71■■■□□ 2.51
RAPGEF3O95398 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC30.71■■■□□ 2.51
RAPGEF3O95398 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC30.71■■■□□ 2.51
RAPGEF3O95398 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
RAPGEF3O95398 NIFKP9-201ENST00000419265 221 ntBASIC30.71■■■□□ 2.51
RAPGEF3O95398 LIN28AP1-201ENST00000429574 405 ntBASIC30.71■■■□□ 2.51
RAPGEF3O95398 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC30.71■■■□□ 2.51
RAPGEF3O95398 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC30.71■■■□□ 2.51
RAPGEF3O95398 MYC-208ENST00000641036 567 ntBASIC30.71■■■□□ 2.51
RAPGEF3O95398 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC30.71■■■□□ 2.51
RAPGEF3O95398 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC30.71■■■□□ 2.51
RAPGEF3O95398 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC30.7■■■□□ 2.51
RAPGEF3O95398 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC30.7■■■□□ 2.51
RAPGEF3O95398 PRR31-201ENST00000371629 978 ntTSL 2 BASIC30.7■■■□□ 2.51
RAPGEF3O95398 KSR1P1-201ENST00000446298 240 ntBASIC30.7■■■□□ 2.51
RAPGEF3O95398 AC063952.2-201ENST00000498792 1227 ntBASIC30.7■■■□□ 2.51
RAPGEF3O95398 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC30.7■■■□□ 2.51
RAPGEF3O95398 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
RAPGEF3O95398 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC30.69■■■□□ 2.5
RAPGEF3O95398 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC30.69■■■□□ 2.5
RAPGEF3O95398 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC30.69■■■□□ 2.5
RAPGEF3O95398 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC30.69■■■□□ 2.5
RAPGEF3O95398 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
RAPGEF3O95398 AK4P3-201ENST00000418260 669 ntBASIC30.69■■■□□ 2.5
RAPGEF3O95398 ATP5G1P1-201ENST00000448724 379 ntBASIC30.69■■■□□ 2.5
RAPGEF3O95398 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC30.69■■■□□ 2.5
RAPGEF3O95398 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC30.69■■■□□ 2.5
RAPGEF3O95398 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC30.69■■■□□ 2.5
RAPGEF3O95398 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC30.69■■■□□ 2.5
RAPGEF3O95398 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC30.69■■■□□ 2.5
RAPGEF3O95398 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC30.68■■■□□ 2.5
RAPGEF3O95398 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
RAPGEF3O95398 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC30.68■■■□□ 2.5
RAPGEF3O95398 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
RAPGEF3O95398 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
RAPGEF3O95398 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC30.68■■■□□ 2.5
RAPGEF3O95398 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
RAPGEF3O95398 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
RAPGEF3O95398 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC30.68■■■□□ 2.5
RAPGEF3O95398 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
RAPGEF3O95398 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
RAPGEF3O95398 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC30.67■■■□□ 2.5
RAPGEF3O95398 KRT16P1-201ENST00000399124 1418 ntBASIC30.67■■■□□ 2.5
RAPGEF3O95398 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC30.67■■■□□ 2.5
RAPGEF3O95398 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC30.67■■■□□ 2.5
RAPGEF3O95398 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
RAPGEF3O95398 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC30.67■■■□□ 2.5
RAPGEF3O95398 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC30.67■■■□□ 2.5
RAPGEF3O95398 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC30.67■■■□□ 2.5
RAPGEF3O95398 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC30.67■■■□□ 2.5
RAPGEF3O95398 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC30.67■■■□□ 2.5
RAPGEF3O95398 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC30.67■■■□□ 2.5
RAPGEF3O95398 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC30.67■■■□□ 2.5
RAPGEF3O95398 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC30.67■■■□□ 2.5
RAPGEF3O95398 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC30.67■■■□□ 2.5
RAPGEF3O95398 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC30.66■■■□□ 2.5
RAPGEF3O95398 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
RAPGEF3O95398 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC30.66■■■□□ 2.5
RAPGEF3O95398 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
RAPGEF3O95398 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC30.66■■■□□ 2.5
RAPGEF3O95398 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
RAPGEF3O95398 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC30.66■■■□□ 2.5
RAPGEF3O95398 AL121906.2-201ENST00000621597 723 ntBASIC30.66■■■□□ 2.5
RAPGEF3O95398 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC30.66■■■□□ 2.5
RAPGEF3O95398 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC30.66■■■□□ 2.5
RAPGEF3O95398 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
RAPGEF3O95398 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
RAPGEF3O95398 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
RAPGEF3O95398 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
RAPGEF3O95398 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC30.65■■■□□ 2.5
RAPGEF3O95398 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
RAPGEF3O95398 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC30.65■■■□□ 2.5
RAPGEF3O95398 MESTP1-201ENST00000404287 994 ntBASIC30.65■■■□□ 2.5
RAPGEF3O95398 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
RAPGEF3O95398 AC023632.3-201ENST00000521633 145 ntBASIC30.65■■■□□ 2.5
RAPGEF3O95398 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
RAPGEF3O95398 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
RAPGEF3O95398 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
RAPGEF3O95398 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC30.64■■■□□ 2.5
RAPGEF3O95398 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC30.64■■■□□ 2.5
RAPGEF3O95398 INGX-201ENST00000359239 846 ntBASIC30.64■■■□□ 2.5
RAPGEF3O95398 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC30.64■■■□□ 2.5
RAPGEF3O95398 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC30.64■■■□□ 2.5
RAPGEF3O95398 AL031133.1-201ENST00000406807 723 ntBASIC30.64■■■□□ 2.5
RAPGEF3O95398 AC026396.1-201ENST00000419388 421 ntBASIC30.64■■■□□ 2.5
RAPGEF3O95398 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC30.64■■■□□ 2.5
RAPGEF3O95398 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC30.64■■■□□ 2.5
RAPGEF3O95398 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
RAPGEF3O95398 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC30.64■■■□□ 2.5
RAPGEF3O95398 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC30.64■■■□□ 2.5
RAPGEF3O95398 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
RAPGEF3O95398 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC30.64■■■□□ 2.5
RAPGEF3O95398 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
RAPGEF3O95398 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms