Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC15.91■□□□□ 0.14
COL6A5A8TX70 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL6A5A8TX70 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
COL6A5A8TX70 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL6A5A8TX70 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL6A5A8TX70 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC15.91■□□□□ 0.14
COL6A5A8TX70 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC15.91■□□□□ 0.14
COL6A5A8TX70 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
COL6A5A8TX70 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL6A5A8TX70 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL6A5A8TX70 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL6A5A8TX70 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC15.9■□□□□ 0.14
COL6A5A8TX70 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
COL6A5A8TX70 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL6A5A8TX70 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC15.9■□□□□ 0.14
COL6A5A8TX70 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC15.9■□□□□ 0.14
COL6A5A8TX70 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC15.9■□□□□ 0.14
COL6A5A8TX70 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL6A5A8TX70 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
COL6A5A8TX70 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC15.9■□□□□ 0.14
COL6A5A8TX70 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC15.9■□□□□ 0.14
COL6A5A8TX70 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
COL6A5A8TX70 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL6A5A8TX70 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC15.9■□□□□ 0.14
COL6A5A8TX70 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL6A5A8TX70 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
COL6A5A8TX70 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC15.9■□□□□ 0.14
COL6A5A8TX70 TSPY21P-201ENST00000433481 731 ntBASIC15.9■□□□□ 0.14
COL6A5A8TX70 TSPY23P-201ENST00000440136 739 ntBASIC15.9■□□□□ 0.14
COL6A5A8TX70 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC15.9■□□□□ 0.14
COL6A5A8TX70 AC009078.2-202ENST00000463353 338 ntBASIC15.9■□□□□ 0.14
COL6A5A8TX70 F2R-202ENST00000505600 442 ntTSL 2 BASIC15.9■□□□□ 0.14
COL6A5A8TX70 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC15.9■□□□□ 0.14
COL6A5A8TX70 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC15.9■□□□□ 0.14
COL6A5A8TX70 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
COL6A5A8TX70 AL671883.3-201ENST00000603274 991 ntBASIC15.9■□□□□ 0.14
COL6A5A8TX70 GRAMD4P8-201ENST00000605465 1115 ntBASIC15.9■□□□□ 0.14
COL6A5A8TX70 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL6A5A8TX70 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC15.9■□□□□ 0.14
COL6A5A8TX70 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL6A5A8TX70 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL6A5A8TX70 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC15.89■□□□□ 0.14
COL6A5A8TX70 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL6A5A8TX70 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL6A5A8TX70 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC15.89■□□□□ 0.13
COL6A5A8TX70 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC15.89■□□□□ 0.13
COL6A5A8TX70 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC15.89■□□□□ 0.13
COL6A5A8TX70 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC15.89■□□□□ 0.13
COL6A5A8TX70 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL6A5A8TX70 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL6A5A8TX70 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC15.89■□□□□ 0.13
COL6A5A8TX70 AC008622.2-201ENST00000617006 1229 ntBASIC15.89■□□□□ 0.13
COL6A5A8TX70 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC15.89■□□□□ 0.13
COL6A5A8TX70 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC15.89■□□□□ 0.13
COL6A5A8TX70 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL6A5A8TX70 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL6A5A8TX70 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC15.89■□□□□ 0.13
COL6A5A8TX70 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC15.89■□□□□ 0.13
COL6A5A8TX70 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL6A5A8TX70 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL6A5A8TX70 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC15.89■□□□□ 0.13
COL6A5A8TX70 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC15.88■□□□□ 0.13
COL6A5A8TX70 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC15.88■□□□□ 0.13
COL6A5A8TX70 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL6A5A8TX70 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC15.88■□□□□ 0.13
COL6A5A8TX70 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL6A5A8TX70 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC15.88■□□□□ 0.13
COL6A5A8TX70 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC15.88■□□□□ 0.13
COL6A5A8TX70 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC15.88■□□□□ 0.13
COL6A5A8TX70 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL6A5A8TX70 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL6A5A8TX70 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL6A5A8TX70 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC15.88■□□□□ 0.13
COL6A5A8TX70 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL6A5A8TX70 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL6A5A8TX70 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL6A5A8TX70 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL6A5A8TX70 CR392000.1-201ENST00000624770 1228 ntBASIC15.88■□□□□ 0.13
COL6A5A8TX70 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL6A5A8TX70 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL6A5A8TX70 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL6A5A8TX70 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL6A5A8TX70 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
COL6A5A8TX70 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL6A5A8TX70 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL6A5A8TX70 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL6A5A8TX70 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC15.87■□□□□ 0.13
COL6A5A8TX70 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC15.87■□□□□ 0.13
COL6A5A8TX70 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC15.87■□□□□ 0.13
COL6A5A8TX70 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC15.87■□□□□ 0.13
COL6A5A8TX70 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
COL6A5A8TX70 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL6A5A8TX70 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC15.87■□□□□ 0.13
COL6A5A8TX70 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
COL6A5A8TX70 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
COL6A5A8TX70 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL6A5A8TX70 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL6A5A8TX70 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL6A5A8TX70 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL6A5A8TX70 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms