Protein–RNA interactions for Protein: A0A0D9SF12

CCDC163, Coiled-coil domain-containing 163, humanhuman

Predictions only

Length 145 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC163A0A0D9SF12 LINC01568-207ENST00000641790 1380 ntBASIC20.17■□□□□ 0.82
CCDC163A0A0D9SF12 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC163A0A0D9SF12 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC163A0A0D9SF12 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC163A0A0D9SF12 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC163A0A0D9SF12 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC163A0A0D9SF12 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC20.16■□□□□ 0.82
CCDC163A0A0D9SF12 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.16■□□□□ 0.82
CCDC163A0A0D9SF12 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.16■□□□□ 0.82
CCDC163A0A0D9SF12 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC163A0A0D9SF12 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
CCDC163A0A0D9SF12 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC20.16■□□□□ 0.82
CCDC163A0A0D9SF12 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC20.16■□□□□ 0.82
CCDC163A0A0D9SF12 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC20.16■□□□□ 0.82
CCDC163A0A0D9SF12 AC116562.2-201ENST00000507042 360 ntBASIC20.16■□□□□ 0.82
CCDC163A0A0D9SF12 NAPSB-206ENST00000562112 1266 ntBASIC20.16■□□□□ 0.82
CCDC163A0A0D9SF12 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC20.16■□□□□ 0.82
CCDC163A0A0D9SF12 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.16■□□□□ 0.82
CCDC163A0A0D9SF12 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC163A0A0D9SF12 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
CCDC163A0A0D9SF12 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC20.16■□□□□ 0.82
CCDC163A0A0D9SF12 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC163A0A0D9SF12 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.15■□□□□ 0.82
CCDC163A0A0D9SF12 FITM1-202ENST00000559294 800 ntBASIC20.15■□□□□ 0.82
CCDC163A0A0D9SF12 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC20.15■□□□□ 0.82
CCDC163A0A0D9SF12 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC20.15■□□□□ 0.82
CCDC163A0A0D9SF12 AP000525.1-201ENST00000608286 694 ntBASIC20.15■□□□□ 0.82
CCDC163A0A0D9SF12 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC20.15■□□□□ 0.82
CCDC163A0A0D9SF12 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC20.15■□□□□ 0.82
CCDC163A0A0D9SF12 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC163A0A0D9SF12 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC163A0A0D9SF12 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC20.15■□□□□ 0.82
CCDC163A0A0D9SF12 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC163A0A0D9SF12 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.82
CCDC163A0A0D9SF12 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
CCDC163A0A0D9SF12 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
CCDC163A0A0D9SF12 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC163A0A0D9SF12 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC163A0A0D9SF12 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.14■□□□□ 0.81
CCDC163A0A0D9SF12 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC163A0A0D9SF12 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC20.14■□□□□ 0.81
CCDC163A0A0D9SF12 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC20.14■□□□□ 0.81
CCDC163A0A0D9SF12 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC163A0A0D9SF12 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC20.14■□□□□ 0.81
CCDC163A0A0D9SF12 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC163A0A0D9SF12 KRT8P9-201ENST00000558927 1449 ntBASIC20.14■□□□□ 0.81
CCDC163A0A0D9SF12 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC163A0A0D9SF12 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC20.14■□□□□ 0.81
CCDC163A0A0D9SF12 CRAT-202ENST00000393384 973 ntTSL 2 BASIC20.14■□□□□ 0.81
CCDC163A0A0D9SF12 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC20.14■□□□□ 0.81
CCDC163A0A0D9SF12 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC20.14■□□□□ 0.81
CCDC163A0A0D9SF12 KSR1P1-201ENST00000446298 240 ntBASIC20.14■□□□□ 0.81
CCDC163A0A0D9SF12 RNF146-204ENST00000476956 884 ntTSL 2 BASIC20.14■□□□□ 0.81
CCDC163A0A0D9SF12 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC20.14■□□□□ 0.81
CCDC163A0A0D9SF12 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC163A0A0D9SF12 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC163A0A0D9SF12 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC163A0A0D9SF12 C1orf229-201ENST00000623686 2258 ntBASIC20.13■□□□□ 0.81
CCDC163A0A0D9SF12 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC163A0A0D9SF12 MIR1238-201ENST00000408483 83 ntBASIC20.13■□□□□ 0.81
CCDC163A0A0D9SF12 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC20.13■□□□□ 0.81
CCDC163A0A0D9SF12 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
CCDC163A0A0D9SF12 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC20.13■□□□□ 0.81
CCDC163A0A0D9SF12 AC011484.1-201ENST00000377652 1995 ntBASIC20.13■□□□□ 0.81
CCDC163A0A0D9SF12 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC20.13■□□□□ 0.81
CCDC163A0A0D9SF12 AC073508.3-201ENST00000619697 1419 ntBASIC20.12■□□□□ 0.81
CCDC163A0A0D9SF12 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC163A0A0D9SF12 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC163A0A0D9SF12 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC163A0A0D9SF12 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC163A0A0D9SF12 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC20.12■□□□□ 0.81
CCDC163A0A0D9SF12 AL137013.1-201ENST00000432946 1228 ntBASIC20.12■□□□□ 0.81
CCDC163A0A0D9SF12 PNN-205ENST00000556530 601 ntTSL 2 BASIC20.12■□□□□ 0.81
CCDC163A0A0D9SF12 DUT-205ENST00000558813 769 ntTSL 2 BASIC20.12■□□□□ 0.81
CCDC163A0A0D9SF12 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC20.12■□□□□ 0.81
CCDC163A0A0D9SF12 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC20.12■□□□□ 0.81
CCDC163A0A0D9SF12 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC163A0A0D9SF12 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC163A0A0D9SF12 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC163A0A0D9SF12 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC20.12■□□□□ 0.81
CCDC163A0A0D9SF12 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.12■□□□□ 0.81
CCDC163A0A0D9SF12 STK25-205ENST00000405883 1904 ntTSL 2 BASIC20.12■□□□□ 0.81
CCDC163A0A0D9SF12 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC20.11■□□□□ 0.81
CCDC163A0A0D9SF12 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC163A0A0D9SF12 TERF1P1-201ENST00000311003 1181 ntBASIC20.11■□□□□ 0.81
CCDC163A0A0D9SF12 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC20.11■□□□□ 0.81
CCDC163A0A0D9SF12 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC20.11■□□□□ 0.81
CCDC163A0A0D9SF12 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC20.11■□□□□ 0.81
CCDC163A0A0D9SF12 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC20.11■□□□□ 0.81
CCDC163A0A0D9SF12 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC20.11■□□□□ 0.81
CCDC163A0A0D9SF12 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC163A0A0D9SF12 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC163A0A0D9SF12 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC163A0A0D9SF12 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
CCDC163A0A0D9SF12 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC163A0A0D9SF12 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC163A0A0D9SF12 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC163A0A0D9SF12 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC163A0A0D9SF12 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC163A0A0D9SF12 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC20.1■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms