Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC18.66■□□□□ 0.58
LRFN1Q9P244 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC18.66■□□□□ 0.58
LRFN1Q9P244 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC18.66■□□□□ 0.58
LRFN1Q9P244 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LRFN1Q9P244 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
LRFN1Q9P244 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC18.66■□□□□ 0.58
LRFN1Q9P244 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LRFN1Q9P244 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
LRFN1Q9P244 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LRFN1Q9P244 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LRFN1Q9P244 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC18.66■□□□□ 0.58
LRFN1Q9P244 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LRFN1Q9P244 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LRFN1Q9P244 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LRFN1Q9P244 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LRFN1Q9P244 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LRFN1Q9P244 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LRFN1Q9P244 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LRFN1Q9P244 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LRFN1Q9P244 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC18.65■□□□□ 0.58
LRFN1Q9P244 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LRFN1Q9P244 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LRFN1Q9P244 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LRFN1Q9P244 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LRFN1Q9P244 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LRFN1Q9P244 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC18.65■□□□□ 0.58
LRFN1Q9P244 AC093827.2-201ENST00000512654 315 ntBASIC18.65■□□□□ 0.58
LRFN1Q9P244 AP006294.2-201ENST00000641667 209 ntBASIC18.65■□□□□ 0.58
LRFN1Q9P244 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
LRFN1Q9P244 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LRFN1Q9P244 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LRFN1Q9P244 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LRFN1Q9P244 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC18.65■□□□□ 0.58
LRFN1Q9P244 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LRFN1Q9P244 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LRFN1Q9P244 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LRFN1Q9P244 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LRFN1Q9P244 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
LRFN1Q9P244 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LRFN1Q9P244 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
LRFN1Q9P244 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
LRFN1Q9P244 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
LRFN1Q9P244 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
LRFN1Q9P244 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC18.64■□□□□ 0.57
LRFN1Q9P244 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC18.64■□□□□ 0.57
LRFN1Q9P244 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC18.64■□□□□ 0.57
LRFN1Q9P244 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC18.64■□□□□ 0.57
LRFN1Q9P244 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LRFN1Q9P244 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC18.64■□□□□ 0.57
LRFN1Q9P244 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
LRFN1Q9P244 AC027702.1-201ENST00000563810 1770 ntBASIC18.64■□□□□ 0.57
LRFN1Q9P244 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LRFN1Q9P244 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LRFN1Q9P244 GGT1-206ENST00000404223 952 ntTSL 2 BASIC18.64■□□□□ 0.57
LRFN1Q9P244 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
LRFN1Q9P244 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC18.64■□□□□ 0.57
LRFN1Q9P244 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
LRFN1Q9P244 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LRFN1Q9P244 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LRFN1Q9P244 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LRFN1Q9P244 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LRFN1Q9P244 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC18.64■□□□□ 0.57
LRFN1Q9P244 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
LRFN1Q9P244 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LRFN1Q9P244 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
LRFN1Q9P244 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LRFN1Q9P244 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LRFN1Q9P244 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
LRFN1Q9P244 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LRFN1Q9P244 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LRFN1Q9P244 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LRFN1Q9P244 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LRFN1Q9P244 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC18.63■□□□□ 0.57
LRFN1Q9P244 AC121338.2-201ENST00000622535 1744 ntBASIC18.63■□□□□ 0.57
LRFN1Q9P244 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
LRFN1Q9P244 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LRFN1Q9P244 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
LRFN1Q9P244 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LRFN1Q9P244 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
LRFN1Q9P244 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LRFN1Q9P244 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
LRFN1Q9P244 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC18.63■□□□□ 0.57
LRFN1Q9P244 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC18.63■□□□□ 0.57
LRFN1Q9P244 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
LRFN1Q9P244 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LRFN1Q9P244 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LRFN1Q9P244 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LRFN1Q9P244 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC18.63■□□□□ 0.57
LRFN1Q9P244 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
LRFN1Q9P244 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LRFN1Q9P244 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC18.63■□□□□ 0.57
LRFN1Q9P244 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
LRFN1Q9P244 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
LRFN1Q9P244 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
LRFN1Q9P244 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
LRFN1Q9P244 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC18.62■□□□□ 0.57
LRFN1Q9P244 SERP1-205ENST00000487153 657 ntTSL 4 BASIC18.62■□□□□ 0.57
LRFN1Q9P244 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
LRFN1Q9P244 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC18.62■□□□□ 0.57
LRFN1Q9P244 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms