Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VPS13CQ709C8 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VPS13CQ709C8 AC079598.2-202ENST00000546624 1451 ntBASIC17.07■□□□□ 0.32
VPS13CQ709C8 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VPS13CQ709C8 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS13CQ709C8 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC17.07■□□□□ 0.32
VPS13CQ709C8 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS13CQ709C8 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS13CQ709C8 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VPS13CQ709C8 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC17.07■□□□□ 0.32
VPS13CQ709C8 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VPS13CQ709C8 NME3-204ENST00000563498 920 ntTSL 2 BASIC17.07■□□□□ 0.32
VPS13CQ709C8 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC17.07■□□□□ 0.32
VPS13CQ709C8 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
VPS13CQ709C8 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS13CQ709C8 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS13CQ709C8 MMP23A-201ENST00000234610 1017 ntBASIC17.07■□□□□ 0.32
VPS13CQ709C8 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC17.07■□□□□ 0.32
VPS13CQ709C8 RMI2-205ENST00000576027 818 ntTSL 2 BASIC17.07■□□□□ 0.32
VPS13CQ709C8 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VPS13CQ709C8 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VPS13CQ709C8 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VPS13CQ709C8 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
VPS13CQ709C8 PRR31-201ENST00000371629 978 ntTSL 2 BASIC17.06■□□□□ 0.32
VPS13CQ709C8 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC17.06■□□□□ 0.32
VPS13CQ709C8 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS13CQ709C8 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC17.06■□□□□ 0.32
VPS13CQ709C8 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
VPS13CQ709C8 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC17.06■□□□□ 0.32
VPS13CQ709C8 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VPS13CQ709C8 KRT18P22-201ENST00000402024 1347 ntBASIC17.06■□□□□ 0.32
VPS13CQ709C8 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC17.06■□□□□ 0.32
VPS13CQ709C8 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VPS13CQ709C8 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VPS13CQ709C8 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC17.06■□□□□ 0.32
VPS13CQ709C8 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
VPS13CQ709C8 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS13CQ709C8 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VPS13CQ709C8 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS13CQ709C8 UNC93B2-201ENST00000285383 730 ntBASIC17.06■□□□□ 0.32
VPS13CQ709C8 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC17.06■□□□□ 0.32
VPS13CQ709C8 RNF146-204ENST00000476956 884 ntTSL 2 BASIC17.06■□□□□ 0.32
VPS13CQ709C8 REXO2-208ENST00000539754 791 ntTSL 2 BASIC17.06■□□□□ 0.32
VPS13CQ709C8 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS13CQ709C8 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VPS13CQ709C8 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS13CQ709C8 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VPS13CQ709C8 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VPS13CQ709C8 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC17.06■□□□□ 0.32
VPS13CQ709C8 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC17.06■□□□□ 0.32
VPS13CQ709C8 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS13CQ709C8 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS13CQ709C8 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS13CQ709C8 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC17.05■□□□□ 0.32
VPS13CQ709C8 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC17.05■□□□□ 0.32
VPS13CQ709C8 AC006011.2-201ENST00000621313 1158 ntBASIC17.05■□□□□ 0.32
VPS13CQ709C8 GALC-202ENST00000393568 2054 ntTSL 2 BASIC17.05■□□□□ 0.32
VPS13CQ709C8 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS13CQ709C8 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS13CQ709C8 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC17.05■□□□□ 0.32
VPS13CQ709C8 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC17.05■□□□□ 0.32
VPS13CQ709C8 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS13CQ709C8 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC17.05■□□□□ 0.32
VPS13CQ709C8 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
VPS13CQ709C8 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC17.05■□□□□ 0.32
VPS13CQ709C8 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VPS13CQ709C8 FDX2-207ENST00000494368 584 ntTSL 4 BASIC17.05■□□□□ 0.32
VPS13CQ709C8 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC17.05■□□□□ 0.32
VPS13CQ709C8 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC17.05■□□□□ 0.32
VPS13CQ709C8 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS13CQ709C8 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS13CQ709C8 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS13CQ709C8 CYP21A1P-202ENST00000354927 1481 ntBASIC17.04■□□□□ 0.32
VPS13CQ709C8 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC17.04■□□□□ 0.32
VPS13CQ709C8 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS13CQ709C8 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC17.04■□□□□ 0.32
VPS13CQ709C8 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC17.04■□□□□ 0.32
VPS13CQ709C8 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS13CQ709C8 AC006557.6-201ENST00000623071 864 ntBASIC17.04■□□□□ 0.32
VPS13CQ709C8 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS13CQ709C8 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
VPS13CQ709C8 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS13CQ709C8 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC17.04■□□□□ 0.32
VPS13CQ709C8 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC17.04■□□□□ 0.32
VPS13CQ709C8 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC17.04■□□□□ 0.32
VPS13CQ709C8 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VPS13CQ709C8 AL590326.2-201ENST00000625139 305 ntBASIC17.04■□□□□ 0.32
VPS13CQ709C8 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS13CQ709C8 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
VPS13CQ709C8 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC17.04■□□□□ 0.32
VPS13CQ709C8 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS13CQ709C8 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC17.04■□□□□ 0.32
VPS13CQ709C8 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
VPS13CQ709C8 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC17.04■□□□□ 0.32
VPS13CQ709C8 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC17.04■□□□□ 0.32
VPS13CQ709C8 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC17.04■□□□□ 0.32
VPS13CQ709C8 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS13CQ709C8 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC17.04■□□□□ 0.32
VPS13CQ709C8 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC17.04■□□□□ 0.32
VPS13CQ709C8 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms