Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
RFX3P48380 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC19.04■□□□□ 0.64
RFX3P48380 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC19.04■□□□□ 0.64
RFX3P48380 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
RFX3P48380 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
RFX3P48380 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
RFX3P48380 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
RFX3P48380 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.04■□□□□ 0.64
RFX3P48380 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
RFX3P48380 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
RFX3P48380 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
RFX3P48380 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
RFX3P48380 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
RFX3P48380 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
RFX3P48380 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
RFX3P48380 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC19.03■□□□□ 0.64
RFX3P48380 AC007322.3-201ENST00000426526 701 ntBASIC19.03■□□□□ 0.64
RFX3P48380 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
RFX3P48380 CDV3P1-201ENST00000471403 739 ntBASIC19.03■□□□□ 0.64
RFX3P48380 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC19.03■□□□□ 0.64
RFX3P48380 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC19.03■□□□□ 0.64
RFX3P48380 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC19.03■□□□□ 0.64
RFX3P48380 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC19.03■□□□□ 0.64
RFX3P48380 AC013268.1-206ENST00000638368 961 ntBASIC19.03■□□□□ 0.64
RFX3P48380 AC112229.1-201ENST00000639295 961 ntBASIC19.03■□□□□ 0.64
RFX3P48380 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
RFX3P48380 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
RFX3P48380 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
RFX3P48380 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
RFX3P48380 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
RFX3P48380 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC19.03■□□□□ 0.64
RFX3P48380 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC19.02■□□□□ 0.64
RFX3P48380 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.02■□□□□ 0.64
RFX3P48380 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
RFX3P48380 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
RFX3P48380 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
RFX3P48380 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
RFX3P48380 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
RFX3P48380 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
RFX3P48380 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
RFX3P48380 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
RFX3P48380 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC19.02■□□□□ 0.64
RFX3P48380 UQCRFS1P1-201ENST00000435169 820 ntBASIC19.02■□□□□ 0.64
RFX3P48380 AC092437.1-201ENST00000624794 1048 ntBASIC19.02■□□□□ 0.64
RFX3P48380 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
RFX3P48380 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
RFX3P48380 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
RFX3P48380 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.63
RFX3P48380 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
RFX3P48380 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
RFX3P48380 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
RFX3P48380 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
RFX3P48380 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
RFX3P48380 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
RFX3P48380 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
RFX3P48380 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
RFX3P48380 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC19.01■□□□□ 0.63
RFX3P48380 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
RFX3P48380 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
RFX3P48380 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
RFX3P48380 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
RFX3P48380 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
RFX3P48380 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
RFX3P48380 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
RFX3P48380 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
RFX3P48380 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
RFX3P48380 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
RFX3P48380 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19■□□□□ 0.63
RFX3P48380 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
RFX3P48380 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC19■□□□□ 0.63
RFX3P48380 AC007225.1-201ENST00000566331 1836 ntBASIC19■□□□□ 0.63
RFX3P48380 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19■□□□□ 0.63
RFX3P48380 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RFX3P48380 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RFX3P48380 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC19■□□□□ 0.63
RFX3P48380 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19■□□□□ 0.63
RFX3P48380 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC19■□□□□ 0.63
RFX3P48380 DUX4L16-201ENST00000555130 1264 ntBASIC19■□□□□ 0.63
RFX3P48380 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC19■□□□□ 0.63
RFX3P48380 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC19■□□□□ 0.63
RFX3P48380 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RFX3P48380 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC19■□□□□ 0.63
RFX3P48380 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RFX3P48380 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC19■□□□□ 0.63
RFX3P48380 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
RFX3P48380 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
RFX3P48380 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC19■□□□□ 0.63
RFX3P48380 LINC01521-201ENST00000504184 1943 ntBASIC19■□□□□ 0.63
RFX3P48380 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC19■□□□□ 0.63
RFX3P48380 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RFX3P48380 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC19■□□□□ 0.63
RFX3P48380 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC19■□□□□ 0.63
RFX3P48380 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC19■□□□□ 0.63
RFX3P48380 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC19■□□□□ 0.63
RFX3P48380 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
RFX3P48380 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC18.99■□□□□ 0.63
RFX3P48380 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
RFX3P48380 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
RFX3P48380 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC18.99■□□□□ 0.63
RFX3P48380 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 64.1 ms