Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC18.36■□□□□ 0.53
SSX4O60224 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC18.36■□□□□ 0.53
SSX4O60224 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SSX4O60224 LETM1P2-201ENST00000597330 2178 ntBASIC18.36■□□□□ 0.53
SSX4O60224 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC18.35■□□□□ 0.53
SSX4O60224 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC18.35■□□□□ 0.53
SSX4O60224 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
SSX4O60224 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SSX4O60224 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SSX4O60224 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SSX4O60224 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
SSX4O60224 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
SSX4O60224 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
SSX4O60224 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SSX4O60224 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SSX4O60224 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
SSX4O60224 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
SSX4O60224 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SSX4O60224 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SSX4O60224 ASL-203ENST00000380839 1765 ntTSL 5 BASIC18.35■□□□□ 0.53
SSX4O60224 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SSX4O60224 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SSX4O60224 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SSX4O60224 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.34■□□□□ 0.53
SSX4O60224 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SSX4O60224 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC18.34■□□□□ 0.53
SSX4O60224 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC18.34■□□□□ 0.53
SSX4O60224 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SSX4O60224 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SSX4O60224 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SSX4O60224 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC18.34■□□□□ 0.53
SSX4O60224 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SSX4O60224 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC18.34■□□□□ 0.53
SSX4O60224 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC18.34■□□□□ 0.53
SSX4O60224 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC18.34■□□□□ 0.53
SSX4O60224 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC18.34■□□□□ 0.53
SSX4O60224 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SSX4O60224 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC18.34■□□□□ 0.53
SSX4O60224 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SSX4O60224 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SSX4O60224 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SSX4O60224 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.53
SSX4O60224 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
SSX4O60224 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SSX4O60224 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SSX4O60224 AC006970.2-201ENST00000450065 779 ntBASIC18.33■□□□□ 0.52
SSX4O60224 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC18.33■□□□□ 0.52
SSX4O60224 RAP2CP1-201ENST00000605103 478 ntBASIC18.33■□□□□ 0.52
SSX4O60224 WWOX-218ENST00000627394 894 ntTSL 5 BASIC18.33■□□□□ 0.52
SSX4O60224 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC18.33■□□□□ 0.52
SSX4O60224 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.52
SSX4O60224 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SSX4O60224 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SSX4O60224 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
SSX4O60224 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC18.33■□□□□ 0.52
SSX4O60224 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SSX4O60224 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SSX4O60224 AC116562.4-201ENST00000641316 2276 ntBASIC18.33■□□□□ 0.52
SSX4O60224 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SSX4O60224 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SSX4O60224 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SSX4O60224 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC18.32■□□□□ 0.52
SSX4O60224 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SSX4O60224 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SSX4O60224 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SSX4O60224 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SSX4O60224 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SSX4O60224 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
SSX4O60224 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC18.32■□□□□ 0.52
SSX4O60224 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC18.32■□□□□ 0.52
SSX4O60224 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC18.32■□□□□ 0.52
SSX4O60224 SPI1-203ENST00000533030 661 ntTSL 2 BASIC18.32■□□□□ 0.52
SSX4O60224 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
SSX4O60224 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC18.32■□□□□ 0.52
SSX4O60224 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SSX4O60224 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SSX4O60224 AC004408.2-201ENST00000623613 2777 ntBASIC18.32■□□□□ 0.52
SSX4O60224 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
SSX4O60224 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SSX4O60224 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SSX4O60224 BX323043.1-201ENST00000641006 1765 ntBASIC18.32■□□□□ 0.52
SSX4O60224 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SSX4O60224 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC18.32■□□□□ 0.52
SSX4O60224 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
SSX4O60224 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SSX4O60224 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
SSX4O60224 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SSX4O60224 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC18.31■□□□□ 0.52
SSX4O60224 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.31■□□□□ 0.52
SSX4O60224 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SSX4O60224 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
SSX4O60224 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SSX4O60224 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC18.31■□□□□ 0.52
SSX4O60224 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SSX4O60224 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SSX4O60224 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC18.31■□□□□ 0.52
SSX4O60224 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SSX4O60224 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SSX4O60224 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SSX4O60224 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms