Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
COL6A5A8TX70 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC15.95■□□□□ 0.14
COL6A5A8TX70 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC15.95■□□□□ 0.14
COL6A5A8TX70 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL6A5A8TX70 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL6A5A8TX70 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL6A5A8TX70 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL6A5A8TX70 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL6A5A8TX70 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
COL6A5A8TX70 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
COL6A5A8TX70 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC15.95■□□□□ 0.14
COL6A5A8TX70 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
COL6A5A8TX70 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL6A5A8TX70 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC15.95■□□□□ 0.14
COL6A5A8TX70 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
COL6A5A8TX70 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC15.95■□□□□ 0.14
COL6A5A8TX70 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
COL6A5A8TX70 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL6A5A8TX70 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
COL6A5A8TX70 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL6A5A8TX70 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
COL6A5A8TX70 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC15.94■□□□□ 0.14
COL6A5A8TX70 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
COL6A5A8TX70 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
COL6A5A8TX70 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC15.94■□□□□ 0.14
COL6A5A8TX70 AL390719.1-204ENST00000412397 1219 ntBASIC15.94■□□□□ 0.14
COL6A5A8TX70 NIFKP9-201ENST00000419265 221 ntBASIC15.94■□□□□ 0.14
COL6A5A8TX70 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC15.94■□□□□ 0.14
COL6A5A8TX70 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
COL6A5A8TX70 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC15.94■□□□□ 0.14
COL6A5A8TX70 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL6A5A8TX70 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC15.94■□□□□ 0.14
COL6A5A8TX70 AC005332.1-201ENST00000577698 1310 ntBASIC15.94■□□□□ 0.14
COL6A5A8TX70 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
COL6A5A8TX70 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC15.94■□□□□ 0.14
COL6A5A8TX70 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL6A5A8TX70 INGX-201ENST00000359239 846 ntBASIC15.94■□□□□ 0.14
COL6A5A8TX70 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL6A5A8TX70 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
COL6A5A8TX70 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC15.94■□□□□ 0.14
COL6A5A8TX70 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC15.94■□□□□ 0.14
COL6A5A8TX70 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC15.94■□□□□ 0.14
COL6A5A8TX70 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC15.94■□□□□ 0.14
COL6A5A8TX70 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC15.94■□□□□ 0.14
COL6A5A8TX70 IER3-202ENST00000376377 1350 ntBASIC15.93■□□□□ 0.14
COL6A5A8TX70 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC15.93■□□□□ 0.14
COL6A5A8TX70 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL6A5A8TX70 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL6A5A8TX70 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL6A5A8TX70 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC15.93■□□□□ 0.14
COL6A5A8TX70 AL031985.4-201ENST00000642138 673 ntBASIC15.93■□□□□ 0.14
COL6A5A8TX70 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
COL6A5A8TX70 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL6A5A8TX70 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC15.93■□□□□ 0.14
COL6A5A8TX70 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
COL6A5A8TX70 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
COL6A5A8TX70 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC15.93■□□□□ 0.14
COL6A5A8TX70 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL6A5A8TX70 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
COL6A5A8TX70 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL6A5A8TX70 HMGA1P5-201ENST00000412453 271 ntBASIC15.93■□□□□ 0.14
COL6A5A8TX70 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC15.93■□□□□ 0.14
COL6A5A8TX70 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
COL6A5A8TX70 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC15.93■□□□□ 0.14
COL6A5A8TX70 CYP21A1P-202ENST00000354927 1481 ntBASIC15.93■□□□□ 0.14
COL6A5A8TX70 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A5A8TX70 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC15.92■□□□□ 0.14
COL6A5A8TX70 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A5A8TX70 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A5A8TX70 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC15.92■□□□□ 0.14
COL6A5A8TX70 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A5A8TX70 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC15.92■□□□□ 0.14
COL6A5A8TX70 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC15.92■□□□□ 0.14
COL6A5A8TX70 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A5A8TX70 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
COL6A5A8TX70 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC15.92■□□□□ 0.14
COL6A5A8TX70 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A5A8TX70 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A5A8TX70 NFE2L3P1-201ENST00000588207 1959 ntBASIC15.92■□□□□ 0.14
COL6A5A8TX70 AC092053.2-201ENST00000640557 1818 ntBASIC15.92■□□□□ 0.14
COL6A5A8TX70 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A5A8TX70 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A5A8TX70 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A5A8TX70 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A5A8TX70 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC15.92■□□□□ 0.14
COL6A5A8TX70 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC15.92■□□□□ 0.14
COL6A5A8TX70 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC15.92■□□□□ 0.14
COL6A5A8TX70 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC15.92■□□□□ 0.14
COL6A5A8TX70 AL138966.2-201ENST00000621997 464 ntBASIC15.92■□□□□ 0.14
COL6A5A8TX70 MED17-227ENST00000640521 2047 ntTSL 5 BASIC15.91■□□□□ 0.14
COL6A5A8TX70 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
COL6A5A8TX70 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL6A5A8TX70 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL6A5A8TX70 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL6A5A8TX70 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL6A5A8TX70 MESTP1-201ENST00000404287 994 ntBASIC15.91■□□□□ 0.14
COL6A5A8TX70 PGM5P4-201ENST00000421970 445 ntBASIC15.91■□□□□ 0.14
COL6A5A8TX70 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC15.91■□□□□ 0.14
COL6A5A8TX70 AC111152.3-201ENST00000569699 673 ntBASIC15.91■□□□□ 0.14
COL6A5A8TX70 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms