Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 RER1-204ENST00000378518 522 ntTSL 3 BASIC20.49■□□□□ 0.87
HMGB4Q8WW32 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HMGB4Q8WW32 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HMGB4Q8WW32 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC20.49■□□□□ 0.87
HMGB4Q8WW32 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
HMGB4Q8WW32 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HMGB4Q8WW32 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC20.49■□□□□ 0.87
HMGB4Q8WW32 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.49■□□□□ 0.87
HMGB4Q8WW32 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
HMGB4Q8WW32 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
HMGB4Q8WW32 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
HMGB4Q8WW32 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HMGB4Q8WW32 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC20.49■□□□□ 0.87
HMGB4Q8WW32 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HMGB4Q8WW32 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HMGB4Q8WW32 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HMGB4Q8WW32 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
HMGB4Q8WW32 AC012676.1-201ENST00000574705 1949 ntBASIC20.49■□□□□ 0.87
HMGB4Q8WW32 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
HMGB4Q8WW32 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HMGB4Q8WW32 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HMGB4Q8WW32 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC20.48■□□□□ 0.87
HMGB4Q8WW32 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
HMGB4Q8WW32 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HMGB4Q8WW32 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
HMGB4Q8WW32 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC20.48■□□□□ 0.87
HMGB4Q8WW32 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
HMGB4Q8WW32 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
HMGB4Q8WW32 AC110285.5-201ENST00000611501 352 ntBASIC20.48■□□□□ 0.87
HMGB4Q8WW32 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
HMGB4Q8WW32 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HMGB4Q8WW32 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HMGB4Q8WW32 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HMGB4Q8WW32 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
HMGB4Q8WW32 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC20.48■□□□□ 0.87
HMGB4Q8WW32 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
HMGB4Q8WW32 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HMGB4Q8WW32 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HMGB4Q8WW32 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC20.47■□□□□ 0.87
HMGB4Q8WW32 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HMGB4Q8WW32 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC20.47■□□□□ 0.87
HMGB4Q8WW32 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.47■□□□□ 0.87
HMGB4Q8WW32 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
HMGB4Q8WW32 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HMGB4Q8WW32 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
HMGB4Q8WW32 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
HMGB4Q8WW32 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC20.47■□□□□ 0.87
HMGB4Q8WW32 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC20.47■□□□□ 0.87
HMGB4Q8WW32 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC20.47■□□□□ 0.87
HMGB4Q8WW32 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
HMGB4Q8WW32 AL049637.2-201ENST00000641778 930 ntBASIC20.47■□□□□ 0.87
HMGB4Q8WW32 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HMGB4Q8WW32 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.47■□□□□ 0.87
HMGB4Q8WW32 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
HMGB4Q8WW32 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.47■□□□□ 0.87
HMGB4Q8WW32 KRT17P2-201ENST00000300992 1314 ntBASIC20.47■□□□□ 0.87
HMGB4Q8WW32 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
HMGB4Q8WW32 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HMGB4Q8WW32 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC20.46■□□□□ 0.87
HMGB4Q8WW32 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
HMGB4Q8WW32 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HMGB4Q8WW32 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
HMGB4Q8WW32 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.46■□□□□ 0.87
HMGB4Q8WW32 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC20.46■□□□□ 0.87
HMGB4Q8WW32 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
HMGB4Q8WW32 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
HMGB4Q8WW32 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HMGB4Q8WW32 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HMGB4Q8WW32 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
HMGB4Q8WW32 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC20.46■□□□□ 0.87
HMGB4Q8WW32 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
HMGB4Q8WW32 BX088651.1-201ENST00000540551 451 ntBASIC20.46■□□□□ 0.87
HMGB4Q8WW32 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC20.46■□□□□ 0.87
HMGB4Q8WW32 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC20.46■□□□□ 0.87
HMGB4Q8WW32 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC20.46■□□□□ 0.87
HMGB4Q8WW32 AP001412.1-201ENST00000608405 714 ntBASIC20.46■□□□□ 0.87
HMGB4Q8WW32 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC20.46■□□□□ 0.87
HMGB4Q8WW32 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
HMGB4Q8WW32 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC20.46■□□□□ 0.87
HMGB4Q8WW32 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
HMGB4Q8WW32 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
HMGB4Q8WW32 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
HMGB4Q8WW32 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
HMGB4Q8WW32 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
HMGB4Q8WW32 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HMGB4Q8WW32 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
HMGB4Q8WW32 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HMGB4Q8WW32 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HMGB4Q8WW32 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
HMGB4Q8WW32 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HMGB4Q8WW32 LINC01023-201ENST00000606054 436 ntBASIC20.45■□□□□ 0.86
HMGB4Q8WW32 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HMGB4Q8WW32 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
HMGB4Q8WW32 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
HMGB4Q8WW32 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HMGB4Q8WW32 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.44■□□□□ 0.86
HMGB4Q8WW32 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC20.44■□□□□ 0.86
HMGB4Q8WW32 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC20.44■□□□□ 0.86
HMGB4Q8WW32 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
HMGB4Q8WW32 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms