Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
DEPDC4Q8N2C3 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
DEPDC4Q8N2C3 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
DEPDC4Q8N2C3 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC18.87■□□□□ 0.61
DEPDC4Q8N2C3 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
DEPDC4Q8N2C3 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC18.87■□□□□ 0.61
DEPDC4Q8N2C3 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
DEPDC4Q8N2C3 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC18.87■□□□□ 0.61
DEPDC4Q8N2C3 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
DEPDC4Q8N2C3 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC18.87■□□□□ 0.61
DEPDC4Q8N2C3 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
DEPDC4Q8N2C3 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
DEPDC4Q8N2C3 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
DEPDC4Q8N2C3 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
DEPDC4Q8N2C3 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC18.87■□□□□ 0.61
DEPDC4Q8N2C3 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC18.86■□□□□ 0.61
DEPDC4Q8N2C3 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC18.86■□□□□ 0.61
DEPDC4Q8N2C3 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
DEPDC4Q8N2C3 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
DEPDC4Q8N2C3 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
DEPDC4Q8N2C3 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
DEPDC4Q8N2C3 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC18.86■□□□□ 0.61
DEPDC4Q8N2C3 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
DEPDC4Q8N2C3 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
DEPDC4Q8N2C3 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
DEPDC4Q8N2C3 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
DEPDC4Q8N2C3 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC18.86■□□□□ 0.61
DEPDC4Q8N2C3 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
DEPDC4Q8N2C3 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC18.86■□□□□ 0.61
DEPDC4Q8N2C3 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
DEPDC4Q8N2C3 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
DEPDC4Q8N2C3 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
DEPDC4Q8N2C3 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
DEPDC4Q8N2C3 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
DEPDC4Q8N2C3 AC099778.1-201ENST00000568593 1911 ntBASIC18.86■□□□□ 0.61
DEPDC4Q8N2C3 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
DEPDC4Q8N2C3 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
DEPDC4Q8N2C3 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
DEPDC4Q8N2C3 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
DEPDC4Q8N2C3 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
DEPDC4Q8N2C3 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
DEPDC4Q8N2C3 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC18.85■□□□□ 0.61
DEPDC4Q8N2C3 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
DEPDC4Q8N2C3 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
DEPDC4Q8N2C3 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
DEPDC4Q8N2C3 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC18.85■□□□□ 0.61
DEPDC4Q8N2C3 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC18.85■□□□□ 0.61
DEPDC4Q8N2C3 AC112907.3-201ENST00000577781 2400 ntBASIC18.85■□□□□ 0.61
DEPDC4Q8N2C3 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
DEPDC4Q8N2C3 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
DEPDC4Q8N2C3 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC18.85■□□□□ 0.61
DEPDC4Q8N2C3 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
DEPDC4Q8N2C3 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
DEPDC4Q8N2C3 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
DEPDC4Q8N2C3 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
DEPDC4Q8N2C3 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
DEPDC4Q8N2C3 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.84■□□□□ 0.61
DEPDC4Q8N2C3 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC18.84■□□□□ 0.61
DEPDC4Q8N2C3 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC18.84■□□□□ 0.61
DEPDC4Q8N2C3 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC18.84■□□□□ 0.61
DEPDC4Q8N2C3 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
DEPDC4Q8N2C3 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
DEPDC4Q8N2C3 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
DEPDC4Q8N2C3 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
DEPDC4Q8N2C3 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC18.84■□□□□ 0.61
DEPDC4Q8N2C3 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
DEPDC4Q8N2C3 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC18.84■□□□□ 0.61
DEPDC4Q8N2C3 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC18.84■□□□□ 0.61
DEPDC4Q8N2C3 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
DEPDC4Q8N2C3 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
DEPDC4Q8N2C3 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
DEPDC4Q8N2C3 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
DEPDC4Q8N2C3 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
DEPDC4Q8N2C3 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC18.84■□□□□ 0.61
DEPDC4Q8N2C3 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
DEPDC4Q8N2C3 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
DEPDC4Q8N2C3 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC18.83■□□□□ 0.61
DEPDC4Q8N2C3 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
DEPDC4Q8N2C3 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
DEPDC4Q8N2C3 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
DEPDC4Q8N2C3 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
DEPDC4Q8N2C3 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC18.83■□□□□ 0.61
DEPDC4Q8N2C3 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
DEPDC4Q8N2C3 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
DEPDC4Q8N2C3 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
DEPDC4Q8N2C3 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
DEPDC4Q8N2C3 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
DEPDC4Q8N2C3 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
DEPDC4Q8N2C3 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC18.83■□□□□ 0.6
DEPDC4Q8N2C3 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
DEPDC4Q8N2C3 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
DEPDC4Q8N2C3 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
DEPDC4Q8N2C3 SMG8-203ENST00000578922 2178 ntBASIC18.83■□□□□ 0.6
DEPDC4Q8N2C3 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
DEPDC4Q8N2C3 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
DEPDC4Q8N2C3 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
DEPDC4Q8N2C3 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
DEPDC4Q8N2C3 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
DEPDC4Q8N2C3 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
DEPDC4Q8N2C3 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms