Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CLRN1P58418 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CLRN1P58418 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
CLRN1P58418 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC18.18■□□□□ 0.5
CLRN1P58418 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CLRN1P58418 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CLRN1P58418 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
CLRN1P58418 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLRN1P58418 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLRN1P58418 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLRN1P58418 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
CLRN1P58418 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLRN1P58418 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC18.17■□□□□ 0.5
CLRN1P58418 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC18.17■□□□□ 0.5
CLRN1P58418 AC006015.1-201ENST00000429970 570 ntBASIC18.17■□□□□ 0.5
CLRN1P58418 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC18.17■□□□□ 0.5
CLRN1P58418 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CLRN1P58418 AC011767.1-201ENST00000617410 1153 ntBASIC18.17■□□□□ 0.5
CLRN1P58418 BID-214ENST00000617586 542 ntTSL 5 BASIC18.17■□□□□ 0.5
CLRN1P58418 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
CLRN1P58418 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLRN1P58418 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLRN1P58418 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC18.17■□□□□ 0.5
CLRN1P58418 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLRN1P58418 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLRN1P58418 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CLRN1P58418 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CLRN1P58418 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC18.17■□□□□ 0.5
CLRN1P58418 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLRN1P58418 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLRN1P58418 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CLRN1P58418 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC18.17■□□□□ 0.5
CLRN1P58418 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
CLRN1P58418 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLRN1P58418 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CLRN1P58418 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CLRN1P58418 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
CLRN1P58418 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC18.16■□□□□ 0.5
CLRN1P58418 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC18.16■□□□□ 0.5
CLRN1P58418 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CLRN1P58418 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC18.16■□□□□ 0.5
CLRN1P58418 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CLRN1P58418 AC092667.1-201ENST00000434301 2586 ntBASIC18.16■□□□□ 0.5
CLRN1P58418 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC18.16■□□□□ 0.5
CLRN1P58418 PBX1-209ENST00000485769 834 ntTSL 2 BASIC18.16■□□□□ 0.5
CLRN1P58418 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC18.16■□□□□ 0.5
CLRN1P58418 CASP6-205ENST00000505486 538 ntTSL 4 BASIC18.16■□□□□ 0.5
CLRN1P58418 AC007322.4-201ENST00000509611 723 ntBASIC18.16■□□□□ 0.5
CLRN1P58418 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC18.16■□□□□ 0.5
CLRN1P58418 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC18.16■□□□□ 0.5
CLRN1P58418 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC18.16■□□□□ 0.5
CLRN1P58418 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC18.16■□□□□ 0.5
CLRN1P58418 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC18.16■□□□□ 0.5
CLRN1P58418 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
CLRN1P58418 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CLRN1P58418 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CLRN1P58418 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC18.16■□□□□ 0.5
CLRN1P58418 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CLRN1P58418 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CLRN1P58418 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CLRN1P58418 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
CLRN1P58418 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
CLRN1P58418 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC18.15■□□□□ 0.5
CLRN1P58418 AC020907.5-201ENST00000624372 1936 ntBASIC18.15■□□□□ 0.5
CLRN1P58418 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLRN1P58418 AC092720.2-201ENST00000602388 1665 ntBASIC18.15■□□□□ 0.5
CLRN1P58418 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC18.15■□□□□ 0.5
CLRN1P58418 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CLRN1P58418 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLRN1P58418 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CLRN1P58418 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLRN1P58418 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC18.15■□□□□ 0.5
CLRN1P58418 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLRN1P58418 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLRN1P58418 ME3-201ENST00000323418 1068 ntTSL 5 BASIC18.15■□□□□ 0.5
CLRN1P58418 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLRN1P58418 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLRN1P58418 UQCRFS1P1-201ENST00000435169 820 ntBASIC18.15■□□□□ 0.5
CLRN1P58418 PARL-206ENST00000435888 1098 ntTSL 5 BASIC18.15■□□□□ 0.5
CLRN1P58418 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CLRN1P58418 AL121603.2-201ENST00000557373 2117 ntBASIC18.15■□□□□ 0.5
CLRN1P58418 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLRN1P58418 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.15■□□□□ 0.5
CLRN1P58418 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CLRN1P58418 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CLRN1P58418 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC18.15■□□□□ 0.5
CLRN1P58418 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CLRN1P58418 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC18.15■□□□□ 0.5
CLRN1P58418 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC18.15■□□□□ 0.5
CLRN1P58418 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
CLRN1P58418 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CLRN1P58418 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
CLRN1P58418 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
CLRN1P58418 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CLRN1P58418 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CLRN1P58418 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CLRN1P58418 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
CLRN1P58418 AC022517.1-201ENST00000592429 346 ntBASIC18.14■□□□□ 0.49
CLRN1P58418 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CLRN1P58418 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms