Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC20.2■□□□□ 0.82
LIMK1P53667 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LIMK1P53667 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LIMK1P53667 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIMK1P53667 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.19■□□□□ 0.82
LIMK1P53667 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIMK1P53667 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIMK1P53667 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIMK1P53667 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIMK1P53667 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIMK1P53667 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.19■□□□□ 0.82
LIMK1P53667 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LIMK1P53667 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIMK1P53667 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LIMK1P53667 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIMK1P53667 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIMK1P53667 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
LIMK1P53667 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC20.19■□□□□ 0.82
LIMK1P53667 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC20.19■□□□□ 0.82
LIMK1P53667 AC145285.6-201ENST00000604632 637 ntBASIC20.19■□□□□ 0.82
LIMK1P53667 AC105020.6-201ENST00000621523 1217 ntBASIC20.19■□□□□ 0.82
LIMK1P53667 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC20.19■□□□□ 0.82
LIMK1P53667 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LIMK1P53667 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC20.19■□□□□ 0.82
LIMK1P53667 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LIMK1P53667 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
LIMK1P53667 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LIMK1P53667 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
LIMK1P53667 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIMK1P53667 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
LIMK1P53667 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.19■□□□□ 0.82
LIMK1P53667 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
LIMK1P53667 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC20.18■□□□□ 0.82
LIMK1P53667 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIMK1P53667 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.18■□□□□ 0.82
LIMK1P53667 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIMK1P53667 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC20.18■□□□□ 0.82
LIMK1P53667 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
LIMK1P53667 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
LIMK1P53667 GGT1-206ENST00000404223 952 ntTSL 2 BASIC20.18■□□□□ 0.82
LIMK1P53667 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC20.18■□□□□ 0.82
LIMK1P53667 NME3-204ENST00000563498 920 ntTSL 2 BASIC20.18■□□□□ 0.82
LIMK1P53667 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIMK1P53667 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
LIMK1P53667 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIMK1P53667 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIMK1P53667 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIMK1P53667 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
LIMK1P53667 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.18■□□□□ 0.82
LIMK1P53667 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC20.18■□□□□ 0.82
LIMK1P53667 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIMK1P53667 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LIMK1P53667 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC20.17■□□□□ 0.82
LIMK1P53667 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
LIMK1P53667 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LIMK1P53667 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
LIMK1P53667 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC20.17■□□□□ 0.82
LIMK1P53667 AP003071.4-201ENST00000562276 1284 ntBASIC20.17■□□□□ 0.82
LIMK1P53667 P4HB-223ENST00000576390 439 ntTSL 4 BASIC20.17■□□□□ 0.82
LIMK1P53667 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
LIMK1P53667 AC005363.2-201ENST00000618631 242 ntBASIC20.17■□□□□ 0.82
LIMK1P53667 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LIMK1P53667 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LIMK1P53667 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LIMK1P53667 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LIMK1P53667 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC20.17■□□□□ 0.82
LIMK1P53667 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
LIMK1P53667 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
LIMK1P53667 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
LIMK1P53667 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC20.17■□□□□ 0.82
LIMK1P53667 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC20.16■□□□□ 0.82
LIMK1P53667 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
LIMK1P53667 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LIMK1P53667 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.16■□□□□ 0.82
LIMK1P53667 CRAT-202ENST00000393384 973 ntTSL 2 BASIC20.16■□□□□ 0.82
LIMK1P53667 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
LIMK1P53667 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
LIMK1P53667 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LIMK1P53667 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LIMK1P53667 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.16■□□□□ 0.82
LIMK1P53667 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC20.16■□□□□ 0.82
LIMK1P53667 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC20.16■□□□□ 0.82
LIMK1P53667 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC20.16■□□□□ 0.82
LIMK1P53667 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.15■□□□□ 0.82
LIMK1P53667 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.15■□□□□ 0.82
LIMK1P53667 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LIMK1P53667 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
LIMK1P53667 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
LIMK1P53667 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC20.15■□□□□ 0.82
LIMK1P53667 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LIMK1P53667 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
LIMK1P53667 AC007322.3-201ENST00000426526 701 ntBASIC20.15■□□□□ 0.82
LIMK1P53667 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC20.15■□□□□ 0.82
LIMK1P53667 CYP21A1P-202ENST00000354927 1481 ntBASIC20.15■□□□□ 0.82
LIMK1P53667 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LIMK1P53667 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
LIMK1P53667 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
LIMK1P53667 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LIMK1P53667 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
LIMK1P53667 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms