Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC18.64■□□□□ 0.57
MSX1P28360 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
MSX1P28360 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
MSX1P28360 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
MSX1P28360 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC18.64■□□□□ 0.57
MSX1P28360 AC087633.2-202ENST00000565166 1439 ntBASIC18.64■□□□□ 0.57
MSX1P28360 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
MSX1P28360 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
MSX1P28360 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
MSX1P28360 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC18.63■□□□□ 0.57
MSX1P28360 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
MSX1P28360 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
MSX1P28360 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC18.63■□□□□ 0.57
MSX1P28360 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC18.63■□□□□ 0.57
MSX1P28360 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
MSX1P28360 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
MSX1P28360 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC18.63■□□□□ 0.57
MSX1P28360 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
MSX1P28360 AC092118.2-201ENST00000613495 667 ntBASIC18.63■□□□□ 0.57
MSX1P28360 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC18.63■□□□□ 0.57
MSX1P28360 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
MSX1P28360 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
MSX1P28360 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
MSX1P28360 AC010980.2-201ENST00000587099 1412 ntBASIC18.63■□□□□ 0.57
MSX1P28360 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
MSX1P28360 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
MSX1P28360 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
MSX1P28360 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
MSX1P28360 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC18.63■□□□□ 0.57
MSX1P28360 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
MSX1P28360 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MSX1P28360 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
MSX1P28360 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC18.62■□□□□ 0.57
MSX1P28360 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
MSX1P28360 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
MSX1P28360 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC18.62■□□□□ 0.57
MSX1P28360 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.62■□□□□ 0.57
MSX1P28360 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
MSX1P28360 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MSX1P28360 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MSX1P28360 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
MSX1P28360 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
MSX1P28360 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
MSX1P28360 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC18.62■□□□□ 0.57
MSX1P28360 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
MSX1P28360 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
MSX1P28360 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
MSX1P28360 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MSX1P28360 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MSX1P28360 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
MSX1P28360 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
MSX1P28360 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MSX1P28360 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MSX1P28360 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
MSX1P28360 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MSX1P28360 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MSX1P28360 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
MSX1P28360 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
MSX1P28360 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MSX1P28360 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
MSX1P28360 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC18.61■□□□□ 0.57
MSX1P28360 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC18.61■□□□□ 0.57
MSX1P28360 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
MSX1P28360 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
MSX1P28360 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
MSX1P28360 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC18.61■□□□□ 0.57
MSX1P28360 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MSX1P28360 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
MSX1P28360 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
MSX1P28360 AC007225.1-201ENST00000566331 1836 ntBASIC18.6■□□□□ 0.57
MSX1P28360 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
MSX1P28360 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MSX1P28360 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC18.6■□□□□ 0.57
MSX1P28360 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC18.6■□□□□ 0.57
MSX1P28360 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC18.6■□□□□ 0.57
MSX1P28360 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC18.6■□□□□ 0.57
MSX1P28360 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
MSX1P28360 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
MSX1P28360 KRT18P68-201ENST00000392293 1000 ntBASIC18.6■□□□□ 0.57
MSX1P28360 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MSX1P28360 AC093787.1-201ENST00000450396 207 ntBASIC18.6■□□□□ 0.57
MSX1P28360 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC18.6■□□□□ 0.57
MSX1P28360 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
MSX1P28360 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC18.6■□□□□ 0.57
MSX1P28360 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC18.6■□□□□ 0.57
MSX1P28360 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
MSX1P28360 CYP2T3P-201ENST00000601990 817 ntBASIC18.6■□□□□ 0.57
MSX1P28360 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC18.6■□□□□ 0.57
MSX1P28360 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MSX1P28360 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
MSX1P28360 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MSX1P28360 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC18.6■□□□□ 0.57
MSX1P28360 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MSX1P28360 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MSX1P28360 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MSX1P28360 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC18.59■□□□□ 0.57
MSX1P28360 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
MSX1P28360 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
MSX1P28360 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC18.59■□□□□ 0.57
MSX1P28360 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms