Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
HMGB1P09429 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
HMGB1P09429 MCRIP2P1-201ENST00000394346 511 ntBASIC24.05■■□□□ 1.44
HMGB1P09429 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
HMGB1P09429 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
HMGB1P09429 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC24.05■■□□□ 1.44
HMGB1P09429 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC24.05■■□□□ 1.44
HMGB1P09429 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC24.05■■□□□ 1.44
HMGB1P09429 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC24.05■■□□□ 1.44
HMGB1P09429 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC24.05■■□□□ 1.44
HMGB1P09429 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC24.05■■□□□ 1.44
HMGB1P09429 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC24.05■■□□□ 1.44
HMGB1P09429 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC24.05■■□□□ 1.44
HMGB1P09429 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
HMGB1P09429 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
HMGB1P09429 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
HMGB1P09429 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC24.05■■□□□ 1.44
HMGB1P09429 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
HMGB1P09429 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
HMGB1P09429 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
HMGB1P09429 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC24.04■■□□□ 1.44
HMGB1P09429 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
HMGB1P09429 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC24.04■■□□□ 1.44
HMGB1P09429 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
HMGB1P09429 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC24.04■■□□□ 1.44
HMGB1P09429 APTR-203ENST00000430801 583 ntTSL 5 BASIC24.04■■□□□ 1.44
HMGB1P09429 CYP2T1P-201ENST00000432607 1285 ntBASIC24.04■■□□□ 1.44
HMGB1P09429 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
HMGB1P09429 AC008694.1-202ENST00000636953 945 ntBASIC24.04■■□□□ 1.44
HMGB1P09429 AL512408.1-201ENST00000569378 2000 ntBASIC24.04■■□□□ 1.44
HMGB1P09429 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC24.04■■□□□ 1.44
HMGB1P09429 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC24.04■■□□□ 1.44
HMGB1P09429 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC24.04■■□□□ 1.44
HMGB1P09429 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
HMGB1P09429 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
HMGB1P09429 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC24.03■■□□□ 1.44
HMGB1P09429 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
HMGB1P09429 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
HMGB1P09429 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
HMGB1P09429 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC24.03■■□□□ 1.44
HMGB1P09429 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
HMGB1P09429 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC24.03■■□□□ 1.44
HMGB1P09429 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC24.03■■□□□ 1.44
HMGB1P09429 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC24.03■■□□□ 1.44
HMGB1P09429 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC24.03■■□□□ 1.44
HMGB1P09429 OR10C1-204ENST00000622521 1039 ntBASIC24.03■■□□□ 1.44
HMGB1P09429 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
HMGB1P09429 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC24.03■■□□□ 1.44
HMGB1P09429 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
HMGB1P09429 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
HMGB1P09429 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
HMGB1P09429 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC24.03■■□□□ 1.44
HMGB1P09429 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC24.03■■□□□ 1.44
HMGB1P09429 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
HMGB1P09429 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
HMGB1P09429 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC24.02■■□□□ 1.44
HMGB1P09429 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC24.02■■□□□ 1.44
HMGB1P09429 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC24.02■■□□□ 1.44
HMGB1P09429 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
HMGB1P09429 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC24.02■■□□□ 1.44
HMGB1P09429 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC24.02■■□□□ 1.44
HMGB1P09429 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC24.02■■□□□ 1.44
HMGB1P09429 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC24.02■■□□□ 1.44
HMGB1P09429 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC24.02■■□□□ 1.44
HMGB1P09429 IKBKGP1-201ENST00000612193 1073 ntBASIC24.02■■□□□ 1.44
HMGB1P09429 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC24.02■■□□□ 1.44
HMGB1P09429 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC24.02■■□□□ 1.44
HMGB1P09429 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
HMGB1P09429 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC24.02■■□□□ 1.44
HMGB1P09429 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC24.02■■□□□ 1.44
HMGB1P09429 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC24.01■■□□□ 1.43
HMGB1P09429 AC073130.3-201ENST00000624389 2278 ntBASIC24.01■■□□□ 1.43
HMGB1P09429 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
HMGB1P09429 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC24.01■■□□□ 1.43
HMGB1P09429 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC24.01■■□□□ 1.43
HMGB1P09429 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC24.01■■□□□ 1.43
HMGB1P09429 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
HMGB1P09429 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
HMGB1P09429 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
HMGB1P09429 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC24.01■■□□□ 1.43
HMGB1P09429 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
HMGB1P09429 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
HMGB1P09429 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC24.01■■□□□ 1.43
HMGB1P09429 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC24.01■■□□□ 1.43
HMGB1P09429 AL137784.2-201ENST00000607332 1000 ntBASIC24.01■■□□□ 1.43
HMGB1P09429 AC080038.1-201ENST00000611274 1154 ntBASIC24.01■■□□□ 1.43
HMGB1P09429 MAZ-216ENST00000616501 991 ntTSL 5 BASIC24.01■■□□□ 1.43
HMGB1P09429 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC24.01■■□□□ 1.43
HMGB1P09429 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
HMGB1P09429 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC24.01■■□□□ 1.43
HMGB1P09429 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC24.01■■□□□ 1.43
HMGB1P09429 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC24.01■■□□□ 1.43
HMGB1P09429 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
HMGB1P09429 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
HMGB1P09429 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC24.01■■□□□ 1.43
HMGB1P09429 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC24■■□□□ 1.43
HMGB1P09429 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
HMGB1P09429 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
HMGB1P09429 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
HMGB1P09429 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms