Protein–RNA interactions for Protein: Q8WWV3

RTN4IP1, Reticulon-4-interacting protein 1, mitochondrial, humanhuman

Predicted RBP Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4IP1Q8WWV3 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RTN4IP1Q8WWV3 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
RTN4IP1Q8WWV3 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC17.14■□□□□ 0.33
RTN4IP1Q8WWV3 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
RTN4IP1Q8WWV3 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
RTN4IP1Q8WWV3 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
RTN4IP1Q8WWV3 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RTN4IP1Q8WWV3 AC123595.1-201ENST00000440769 1046 ntBASIC17.14■□□□□ 0.33
RTN4IP1Q8WWV3 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC17.14■□□□□ 0.33
RTN4IP1Q8WWV3 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RTN4IP1Q8WWV3 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC17.14■□□□□ 0.33
RTN4IP1Q8WWV3 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC17.14■□□□□ 0.33
RTN4IP1Q8WWV3 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC17.14■□□□□ 0.33
RTN4IP1Q8WWV3 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RTN4IP1Q8WWV3 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RTN4IP1Q8WWV3 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RTN4IP1Q8WWV3 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
RTN4IP1Q8WWV3 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RTN4IP1Q8WWV3 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
RTN4IP1Q8WWV3 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
RTN4IP1Q8WWV3 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
RTN4IP1Q8WWV3 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RTN4IP1Q8WWV3 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
RTN4IP1Q8WWV3 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RTN4IP1Q8WWV3 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
RTN4IP1Q8WWV3 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RTN4IP1Q8WWV3 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC17.13■□□□□ 0.33
RTN4IP1Q8WWV3 AC079140.4-201ENST00000507448 529 ntBASIC17.13■□□□□ 0.33
RTN4IP1Q8WWV3 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC17.13■□□□□ 0.33
RTN4IP1Q8WWV3 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC17.13■□□□□ 0.33
RTN4IP1Q8WWV3 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
RTN4IP1Q8WWV3 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
RTN4IP1Q8WWV3 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RTN4IP1Q8WWV3 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
RTN4IP1Q8WWV3 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
RTN4IP1Q8WWV3 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
RTN4IP1Q8WWV3 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
RTN4IP1Q8WWV3 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RTN4IP1Q8WWV3 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RTN4IP1Q8WWV3 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RTN4IP1Q8WWV3 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RTN4IP1Q8WWV3 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC17.12■□□□□ 0.33
RTN4IP1Q8WWV3 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RTN4IP1Q8WWV3 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RTN4IP1Q8WWV3 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
RTN4IP1Q8WWV3 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RTN4IP1Q8WWV3 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
RTN4IP1Q8WWV3 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RTN4IP1Q8WWV3 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RTN4IP1Q8WWV3 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC17.12■□□□□ 0.33
RTN4IP1Q8WWV3 STX6-204ENST00000542060 4809 ntTSL 2 BASIC17.12■□□□□ 0.33
RTN4IP1Q8WWV3 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
RTN4IP1Q8WWV3 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RTN4IP1Q8WWV3 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RTN4IP1Q8WWV3 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC17.12■□□□□ 0.33
RTN4IP1Q8WWV3 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RTN4IP1Q8WWV3 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RTN4IP1Q8WWV3 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC17.11■□□□□ 0.33
RTN4IP1Q8WWV3 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC17.11■□□□□ 0.33
RTN4IP1Q8WWV3 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC17.11■□□□□ 0.33
RTN4IP1Q8WWV3 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
RTN4IP1Q8WWV3 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RTN4IP1Q8WWV3 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RTN4IP1Q8WWV3 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RTN4IP1Q8WWV3 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC17.11■□□□□ 0.33
RTN4IP1Q8WWV3 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RTN4IP1Q8WWV3 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
RTN4IP1Q8WWV3 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RTN4IP1Q8WWV3 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RTN4IP1Q8WWV3 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RTN4IP1Q8WWV3 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
RTN4IP1Q8WWV3 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC17.11■□□□□ 0.33
RTN4IP1Q8WWV3 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RTN4IP1Q8WWV3 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RTN4IP1Q8WWV3 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC17.11■□□□□ 0.33
RTN4IP1Q8WWV3 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
RTN4IP1Q8WWV3 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
RTN4IP1Q8WWV3 KRT87P-202ENST00000534226 1464 ntBASIC17.11■□□□□ 0.33
RTN4IP1Q8WWV3 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
RTN4IP1Q8WWV3 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
RTN4IP1Q8WWV3 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
RTN4IP1Q8WWV3 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC17.1■□□□□ 0.33
RTN4IP1Q8WWV3 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC17.1■□□□□ 0.33
RTN4IP1Q8WWV3 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
RTN4IP1Q8WWV3 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RTN4IP1Q8WWV3 AC099778.1-201ENST00000568593 1911 ntBASIC17.1■□□□□ 0.33
RTN4IP1Q8WWV3 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
RTN4IP1Q8WWV3 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RTN4IP1Q8WWV3 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
RTN4IP1Q8WWV3 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC17.1■□□□□ 0.33
RTN4IP1Q8WWV3 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC17.1■□□□□ 0.33
RTN4IP1Q8WWV3 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC17.1■□□□□ 0.33
RTN4IP1Q8WWV3 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC17.1■□□□□ 0.33
RTN4IP1Q8WWV3 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC17.1■□□□□ 0.33
RTN4IP1Q8WWV3 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC17.1■□□□□ 0.33
RTN4IP1Q8WWV3 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RTN4IP1Q8WWV3 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RTN4IP1Q8WWV3 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
RTN4IP1Q8WWV3 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RTN4IP1Q8WWV3 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms