Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
HMGCS2P54868 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC23.72■■□□□ 1.39
HMGCS2P54868 BX088651.1-201ENST00000540551 451 ntBASIC23.72■■□□□ 1.39
HMGCS2P54868 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC23.72■■□□□ 1.39
HMGCS2P54868 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
HMGCS2P54868 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
HMGCS2P54868 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC23.72■■□□□ 1.39
HMGCS2P54868 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
HMGCS2P54868 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC23.72■■□□□ 1.39
HMGCS2P54868 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
HMGCS2P54868 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
HMGCS2P54868 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
HMGCS2P54868 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
HMGCS2P54868 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
HMGCS2P54868 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
HMGCS2P54868 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
HMGCS2P54868 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
HMGCS2P54868 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
HMGCS2P54868 DYM-203ENST00000442713 2147 ntTSL 2 BASIC23.71■■□□□ 1.39
HMGCS2P54868 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC23.71■■□□□ 1.39
HMGCS2P54868 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC23.71■■□□□ 1.39
HMGCS2P54868 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
HMGCS2P54868 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC23.71■■□□□ 1.39
HMGCS2P54868 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
HMGCS2P54868 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC23.71■■□□□ 1.39
HMGCS2P54868 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
HMGCS2P54868 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC23.71■■□□□ 1.39
HMGCS2P54868 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC23.71■■□□□ 1.39
HMGCS2P54868 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC23.71■■□□□ 1.39
HMGCS2P54868 RPS20-210ENST00000523936 899 ntTSL 2 BASIC23.71■■□□□ 1.39
HMGCS2P54868 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC23.71■■□□□ 1.39
HMGCS2P54868 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC23.71■■□□□ 1.39
HMGCS2P54868 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
HMGCS2P54868 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
HMGCS2P54868 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC23.7■■□□□ 1.39
HMGCS2P54868 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC23.7■■□□□ 1.39
HMGCS2P54868 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
HMGCS2P54868 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
HMGCS2P54868 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
HMGCS2P54868 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC23.7■■□□□ 1.38
HMGCS2P54868 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC23.7■■□□□ 1.38
HMGCS2P54868 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC23.7■■□□□ 1.38
HMGCS2P54868 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC23.7■■□□□ 1.38
HMGCS2P54868 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC23.7■■□□□ 1.38
HMGCS2P54868 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC23.7■■□□□ 1.38
HMGCS2P54868 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.38
HMGCS2P54868 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC23.7■■□□□ 1.38
HMGCS2P54868 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
HMGCS2P54868 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
HMGCS2P54868 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
HMGCS2P54868 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
HMGCS2P54868 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
HMGCS2P54868 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
HMGCS2P54868 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
HMGCS2P54868 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC23.69■■□□□ 1.38
HMGCS2P54868 KRT17P2-201ENST00000300992 1314 ntBASIC23.69■■□□□ 1.38
HMGCS2P54868 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC23.69■■□□□ 1.38
HMGCS2P54868 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC23.69■■□□□ 1.38
HMGCS2P54868 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
HMGCS2P54868 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
HMGCS2P54868 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC23.69■■□□□ 1.38
HMGCS2P54868 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC23.69■■□□□ 1.38
HMGCS2P54868 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC23.69■■□□□ 1.38
HMGCS2P54868 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC23.69■■□□□ 1.38
HMGCS2P54868 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
HMGCS2P54868 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC23.69■■□□□ 1.38
HMGCS2P54868 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC23.69■■□□□ 1.38
HMGCS2P54868 STK25-205ENST00000405883 1904 ntTSL 2 BASIC23.69■■□□□ 1.38
HMGCS2P54868 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC23.69■■□□□ 1.38
HMGCS2P54868 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC23.68■■□□□ 1.38
HMGCS2P54868 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC23.68■■□□□ 1.38
HMGCS2P54868 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
HMGCS2P54868 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC23.68■■□□□ 1.38
HMGCS2P54868 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC23.68■■□□□ 1.38
HMGCS2P54868 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
HMGCS2P54868 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC23.68■■□□□ 1.38
HMGCS2P54868 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC23.68■■□□□ 1.38
HMGCS2P54868 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
HMGCS2P54868 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC23.68■■□□□ 1.38
HMGCS2P54868 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC23.68■■□□□ 1.38
HMGCS2P54868 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC23.68■■□□□ 1.38
HMGCS2P54868 LINC01023-201ENST00000606054 436 ntBASIC23.68■■□□□ 1.38
HMGCS2P54868 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
HMGCS2P54868 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
HMGCS2P54868 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC23.68■■□□□ 1.38
HMGCS2P54868 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
HMGCS2P54868 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC23.67■■□□□ 1.38
HMGCS2P54868 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC23.67■■□□□ 1.38
HMGCS2P54868 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
HMGCS2P54868 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
HMGCS2P54868 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
HMGCS2P54868 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC23.67■■□□□ 1.38
HMGCS2P54868 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC23.67■■□□□ 1.38
HMGCS2P54868 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
HMGCS2P54868 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
HMGCS2P54868 AP001412.1-201ENST00000608405 714 ntBASIC23.67■■□□□ 1.38
HMGCS2P54868 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
HMGCS2P54868 AC113410.3-201ENST00000623366 203 ntBASIC23.67■■□□□ 1.38
HMGCS2P54868 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC23.67■■□□□ 1.38
HMGCS2P54868 AL135905.2-201ENST00000584934 1404 ntBASIC23.67■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms