Protein–RNA interactions for Protein: P48412

UPF3, Nonsense-mediated mRNA decay protein 3, yeastyeast

Known RBP Predictions only

Length 387 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UPF3P48412 YLR031WYLR031W 561 nt2.43□□□□□ -2.02
UPF3P48412 YOR055WYOR055W 435 nt2.43□□□□□ -2.02
UPF3P48412 ATP3YBR039W 936 nt2.43□□□□□ -2.02
UPF3P48412 IRC16YPR038W 360 nt2.43□□□□□ -2.02
UPF3P48412 SLM6YBR266C 453 nt2.43□□□□□ -2.02
UPF3P48412 SIR3YLR442C 2937 nt2.43□□□□□ -2.02
UPF3P48412 YKR078WYKR078W 1758 nt2.43□□□□□ -2.02
UPF3P48412 PDR1YGL013C 3207 nt2.42□□□□□ -2.02
UPF3P48412 YGR018CYGR018C 330 nt2.42□□□□□ -2.02
UPF3P48412 YHR032W-AYHR032W-A 180 nt2.42□□□□□ -2.02
UPF3P48412 RPI1YIL119C 1224 nt2.42□□□□□ -2.02
UPF3P48412 YLR379WYLR379W 375 nt2.42□□□□□ -2.02
UPF3P48412 RPS17AYML024W 411 nt2.42□□□□□ -2.02
UPF3P48412 VPS20YMR077C 666 nt2.42□□□□□ -2.02
UPF3P48412 VTI1YMR197C 654 nt2.42□□□□□ -2.02
UPF3P48412 LSM7YNL147W 348 nt2.42□□□□□ -2.02
UPF3P48412 ATX2YOR079C 942 nt2.42□□□□□ -2.02
UPF3P48412 PET123YOR158W 957 nt2.42□□□□□ -2.02
UPF3P48412 GAL7YBR018C 1101 nt2.42□□□□□ -2.02
UPF3P48412 MPH1YIR002C 2982 nt2.42□□□□□ -2.02
UPF3P48412 NIC96YFR002W 2520 nt2.41□□□□□ -2.02
UPF3P48412 NUP82YJL061W 2142 nt2.41□□□□□ -2.02
UPF3P48412 YJL181WYJL181W 1836 nt2.41□□□□□ -2.02
UPF3P48412 snR70snR70 164 nt2.41□□□□□ -2.02
UPF3P48412 tT(UGU)Q1tT(UGU)Q1 76 nt2.41□□□□□ -2.02
UPF3P48412 MSL1YIR009W 336 nt2.41□□□□□ -2.02
UPF3P48412 UTP30YKR060W 825 nt2.41□□□□□ -2.02
UPF3P48412 SEN15YMR059W 387 nt2.41□□□□□ -2.02
UPF3P48412 ATP15YPL271W 189 nt2.41□□□□□ -2.02
UPF3P48412 YBR076C-AYBR076C-A 267 nt2.41□□□□□ -2.02
UPF3P48412 CLN3YAL040C 1743 nt2.4□□□□□ -2.02
UPF3P48412 YEL018C-AYEL018C-A 534 nt2.4□□□□□ -2.03
UPF3P48412 YGR045CYGR045C 363 nt2.4□□□□□ -2.03
UPF3P48412 YLR154W-EYLR154W-E 204 nt2.4□□□□□ -2.03
UPF3P48412 DDR48YMR173W 1293 nt2.4□□□□□ -2.03
UPF3P48412 SIP18YMR175W 240 nt2.4□□□□□ -2.03
UPF3P48412 PDR11YIL013C 4236 nt2.4□□□□□ -2.03
UPF3P48412 PTP3YER075C 2787 nt2.39□□□□□ -2.03
UPF3P48412 SNC1YAL030W 354 nt2.39□□□□□ -2.03
UPF3P48412 VPH1YOR270C 2523 nt2.39□□□□□ -2.03
UPF3P48412 CRM1YGR218W 3255 nt2.39□□□□□ -2.03
UPF3P48412 YOR192C-AYOR192C-A 1317 nt2.39□□□□□ -2.03
UPF3P48412 SMC6YLR383W 3345 nt2.39□□□□□ -2.03
UPF3P48412 RAV1YJR033C 4074 nt2.38□□□□□ -2.03
UPF3P48412 RSE1YML049C 4086 nt2.38□□□□□ -2.03
UPF3P48412 VOA1YGR106C 798 nt2.38□□□□□ -2.03
UPF3P48412 RPC10YHR143W-A 213 nt2.38□□□□□ -2.03
UPF3P48412 YJR079WYJR079W 330 nt2.38□□□□□ -2.03
UPF3P48412 YLR154W-AYLR154W-A 186 nt2.38□□□□□ -2.03
UPF3P48412 GRX8YLR364W 330 nt2.38□□□□□ -2.03
UPF3P48412 MRPL44YMR225C 297 nt2.38□□□□□ -2.03
UPF3P48412 YOR050CYOR050C 348 nt2.38□□□□□ -2.03
UPF3P48412 RSA1YPL193W 1146 nt2.38□□□□□ -2.03
UPF3P48412 ROX1YPR065W 1107 nt2.38□□□□□ -2.03
UPF3P48412 CSF1YLR087C 8877 nt2.38□□□□□ -2.03
UPF3P48412 MSS11YMR164C 2277 nt2.38□□□□□ -2.03
UPF3P48412 NAN1YPL126W 2691 nt2.37□□□□□ -2.03
UPF3P48412 GIP3YPL137C 3831 nt2.37□□□□□ -2.03
UPF3P48412 YER079C-AYER079C-A 339 nt2.37□□□□□ -2.03
UPF3P48412 FYV7YLR068W 456 nt2.37□□□□□ -2.03
UPF3P48412 ATP19YOL077W-A 207 nt2.37□□□□□ -2.03
UPF3P48412 SVL3YPL032C 2478 nt2.37□□□□□ -2.03
UPF3P48412 BUB1YGR188C 3066 nt2.37□□□□□ -2.03
UPF3P48412 UBR1YGR184C 5853 nt2.37□□□□□ -2.03
UPF3P48412 BFA1YJR053W 1725 nt2.37□□□□□ -2.03
UPF3P48412 SHE9YDR393W 1371 nt2.36□□□□□ -2.03
UPF3P48412 MUD2YKL074C 1584 nt2.36□□□□□ -2.03
UPF3P48412 CDC53YDL132W 2448 nt2.36□□□□□ -2.03
UPF3P48412 SPF1YEL031W 3648 nt2.36□□□□□ -2.03
UPF3P48412 NOP10YHR072W-A 177 nt2.36□□□□□ -2.03
UPF3P48412 IRC19YLL033W 693 nt2.36□□□□□ -2.03
UPF3P48412 RPB5YBR154C 648 nt2.36□□□□□ -2.03
UPF3P48412 NEW1YPL226W 3591 nt2.36□□□□□ -2.03
UPF3P48412 IPT1YDR072C 1584 nt2.36□□□□□ -2.03
UPF3P48412 PPN1YDR452W 2025 nt2.35□□□□□ -2.03
UPF3P48412 MLH1YMR167W 2310 nt2.35□□□□□ -2.03
UPF3P48412 YER188C-AYER188C-A 300 nt2.35□□□□□ -2.03
UPF3P48412 COX13YGL191W 390 nt2.35□□□□□ -2.03
UPF3P48412 NCE101YJL205C 162 nt2.35□□□□□ -2.03
UPF3P48412 BET3YKR068C 582 nt2.35□□□□□ -2.03
UPF3P48412 YLR171WYLR171W 390 nt2.35□□□□□ -2.03
UPF3P48412 YML108WYML108W 318 nt2.35□□□□□ -2.03
UPF3P48412 SAS2YMR127C 1017 nt2.35□□□□□ -2.03
UPF3P48412 CDC60YPL160W 3273 nt2.35□□□□□ -2.03
UPF3P48412 SPC72YAL047C 1869 nt2.35□□□□□ -2.03
UPF3P48412 RIC1YLR039C 3171 nt2.35□□□□□ -2.03
UPF3P48412 TRL1YJL087C 2484 nt2.34□□□□□ -2.03
UPF3P48412 ECL1YGR146C 636 nt2.34□□□□□ -2.03
UPF3P48412 YHR214W-AYHR214W-A 486 nt2.34□□□□□ -2.03
UPF3P48412 YKR051WYKR051W 1257 nt2.34□□□□□ -2.03
UPF3P48412 YAR068WYAR068W 486 nt2.34□□□□□ -2.03
UPF3P48412 STE11YLR362W 2154 nt2.34□□□□□ -2.04
UPF3P48412 IRC10YOL015W 1761 nt2.33□□□□□ -2.04
UPF3P48412 RTT101YJL047C 2529 nt2.33□□□□□ -2.04
UPF3P48412 SMD1YGR074W 441 nt2.33□□□□□ -2.04
UPF3P48412 EMC6YLL014W 327 nt2.33□□□□□ -2.04
UPF3P48412 SNC2YOR327C 348 nt2.33□□□□□ -2.04
UPF3P48412 TSC3YBR058C-A 243 nt2.33□□□□□ -2.04
UPF3P48412 RNH70YGR276C 1662 nt2.32□□□□□ -2.04
UPF3P48412 YCR064CYCR064C 411 nt2.32□□□□□ -2.04
Retrieved 100 of 7,029 protein–RNA pairs in 24.2 ms