RNA–Protein interactions for RNA: YLR087C

CSF1, Transcript of Protein required for fermentation at low temperature, yeast

Gene CSF1, Length 8,877 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CSF1	YLR087C	RQC2	Q12532	1038 aa	Known RBP	4.12	□□□□□ -1.75
CSF1	YLR087C	AIM44	Q99299	758 aa		3.56	□□□□□ -1.84
CSF1	YLR087C	SKI3	P17883	1432 aa	Known RBP	3.5	□□□□□ -1.85
CSF1	YLR087C	SAS10	Q12136	610 aa	Predicted RBP	3.43	□□□□□ -1.86
CSF1	YLR087C	CAB3	P36076	571 aa		3.38	□□□□□ -1.87
CSF1	YLR087C	TAF7	Q05021	590 aa		3.36	□□□□□ -1.87
CSF1	YLR087C	SPA2	P23201	1466 aa	Known RBP	3.36	□□□□□ -1.87
CSF1	YLR087C	LEO1	P38439	464 aa		3.33	□□□□□ -1.88
CSF1	YLR087C	INO80	P53115	1489 aa		3.32	□□□□□ -1.88
CSF1	YLR087C	MNN4	P36044	1178 aa		3.31	□□□□□ -1.88
CSF1	YLR087C	TFA1	P36100	482 aa		3.31	□□□□□ -1.88
CSF1	YLR087C	RIX1	P38883	763 aa	Predicted RBP	3.3	□□□□□ -1.88
CSF1	YLR087C	AVT3	P36062	692 aa		3.28	□□□□□ -1.88
CSF1	YLR087C	CHD1	P32657	1468 aa		3.26	□□□□□ -1.89
CSF1	YLR087C	TCB3	Q03640	1545 aa	Known RBP	3.26	□□□□□ -1.89
CSF1	YLR087C	RSE1	Q04693	1361 aa	Known RBP	3.24	□□□□□ -1.89
CSF1	YLR087C	RLF2	Q12495	606 aa		3.22	□□□□□ -1.89
CSF1	YLR087C	HGH1	P48362	394 aa	Known RBP	3.21	□□□□□ -1.9
CSF1	YLR087C	YRB30	P53107	440 aa	Predicted RBP	3.21	□□□□□ -1.9
CSF1	YLR087C	DRS1	P32892	752 aa	Known RBP	3.21	□□□□□ -1.9
CSF1	YLR087C	BFR2	Q06631	534 aa	Known RBP	3.19	□□□□□ -1.9
CSF1	YLR087C	SPT2	P06843	333 aa	Predicted RBP	3.19	□□□□□ -1.9
CSF1	YLR087C	QCR6	P00127	147 aa		3.18	□□□□□ -1.9
CSF1	YLR087C	FPR3	P38911	411 aa	Known RBP	3.17	□□□□□ -1.9
CSF1	YLR087C	RKM3	P38222	552 aa		3.17	□□□□□ -1.9
CSF1	YLR087C	FUN12	P39730	1002 aa	Known RBP	3.16	□□□□□ -1.9
CSF1	YLR087C	TOP1	P04786	769 aa		3.16	□□□□□ -1.9
CSF1	YLR087C	SCT1	P32784	759 aa		3.15	□□□□□ -1.9
CSF1	YLR087C	PLP2	Q12017	286 aa		3.14	□□□□□ -1.91
CSF1	YLR087C	SEC3	P33332	1336 aa	Known RBP	3.14	□□□□□ -1.91
CSF1	YLR087C	HSP82	P02829	709 aa	Known RBP	3.13	□□□□□ -1.91
CSF1	YLR087C	SWE1	P32944	819 aa		3.13	□□□□□ -1.91
CSF1	YLR087C	SEC27	P41811	889 aa	Known RBP	3.1	□□□□□ -1.91
CSF1	YLR087C	FPR4	Q06205	392 aa	Predicted RBP	3.09	□□□□□ -1.91
CSF1	YLR087C	YGL081W	P53156	320 aa		3.09	□□□□□ -1.91
CSF1	YLR087C	PET111	P08468	800 aa		3.08	□□□□□ -1.92
CSF1	YLR087C	RLP24	Q07915	199 aa	Known RBP	3.08	□□□□□ -1.92
CSF1	YLR087C	NAB3	P38996	802 aa	Known RBP RIP-Chip data	3.08	□□□□□ -1.92	not detected
CSF1	YLR087C	CHZ1	P40019	153 aa	Predicted RBP	3.06	□□□□□ -1.92
CSF1	YLR087C	LEU3	P08638	886 aa		3.06	□□□□□ -1.92
CSF1	YLR087C	NOP2	P40991	618 aa	Known RBP	3.06	□□□□□ -1.92
CSF1	YLR087C	HUL5	P53119	910 aa		3.06	□□□□□ -1.92
CSF1	YLR087C	DOS2	P54858	310 aa		3.06	□□□□□ -1.92
CSF1	YLR087C	YML133C	Q03099	1374 aa		3.05	□□□□□ -1.92
CSF1	YLR087C	YLL067C	Q07888	1374 aa		3.05	□□□□□ -1.92
CSF1	YLR087C	YLL066C	Q99208	1374 aa		3.05	□□□□□ -1.92
CSF1	YLR087C	IOC4	Q04213	475 aa		3.05	□□□□□ -1.92
CSF1	YLR087C	SPP41	P38904	1435 aa		3.05	□□□□□ -1.92
CSF1	YLR087C	IRC20	Q06554	1556 aa		3.03	□□□□□ -1.92
CSF1	YLR087C	SUB1	P54000	292 aa	Known RBP	3.03	□□□□□ -1.92
CSF1	YLR087C	IFH1	P39520	1085 aa		3.02	□□□□□ -1.93
CSF1	YLR087C	XRN1	P22147	1528 aa	Known RBP	3.02	□□□□□ -1.93
CSF1	YLR087C	SPT6	P23615	1451 aa	Known RBP	3.01	□□□□□ -1.93
CSF1	YLR087C	SFB2	P53953	876 aa		3	□□□□□ -1.93
CSF1	YLR087C	PAN1	P32521	1480 aa		3	□□□□□ -1.93
CSF1	YLR087C	SIS2	P36024	562 aa		3	□□□□□ -1.93
CSF1	YLR087C	YGR130C	P53278	816 aa		3	□□□□□ -1.93
CSF1	YLR087C	PDR10	P51533	1564 aa		2.99	□□□□□ -1.93
CSF1	YLR087C	SMC4	Q12267	1418 aa		2.99	□□□□□ -1.93
CSF1	YLR087C	RNA1	P11745	407 aa	Known RBP	2.99	□□□□□ -1.93
CSF1	YLR087C	MEF1	P25039	761 aa		2.99	□□□□□ -1.93
CSF1	YLR087C	YFR016C	P43597	1233 aa	Known RBP	2.98	□□□□□ -1.93
CSF1	YLR087C	NOP7	P53261	605 aa	Known RBP	2.98	□□□□□ -1.93
CSF1	YLR087C	PDR5	P33302	1511 aa	Known RBP	2.97	□□□□□ -1.93
CSF1	YLR087C	TCB2	P48231	1178 aa		2.97	□□□□□ -1.93
CSF1	YLR087C	NOP53	Q12080	455 aa	Known RBP	2.97	□□□□□ -1.93
CSF1	YLR087C	POL4	P25615	582 aa		2.96	□□□□□ -1.94
CSF1	YLR087C	VPS72	Q03388	795 aa		2.96	□□□□□ -1.94
CSF1	YLR087C	YRF1-4	O13559	1382 aa		2.95	□□□□□ -1.94
CSF1	YLR087C	URN1	Q06525	465 aa	Known RBP	2.95	□□□□□ -1.94
CSF1	YLR087C	EFB1	P32471	206 aa	Known RBP	2.94	□□□□□ -1.94
CSF1	YLR087C	PUP2	P32379	260 aa		2.93	□□□□□ -1.94
CSF1	YLR087C	YSP2	Q06681	1438 aa		2.93	□□□□□ -1.94
CSF1	YLR087C	SPT7	P35177	1332 aa		2.93	□□□□□ -1.94
CSF1	YLR087C	SPB4	P25808	606 aa	Predicted RBP	2.93	□□□□□ -1.94
CSF1	YLR087C	YRM1	Q12340	786 aa		2.93	□□□□□ -1.94
CSF1	YLR087C	PET100	P38958	111 aa		2.92	□□□□□ -1.94
CSF1	YLR087C	ENP1	P38333	483 aa	Known RBP	2.92	□□□□□ -1.94
CSF1	YLR087C	ASF1	P32447	279 aa		2.91	□□□□□ -1.94
CSF1	YLR087C	TOA1	P32773	286 aa		2.91	□□□□□ -1.94
CSF1	YLR087C	TIF5	P38431	405 aa	Known RBP	2.91	□□□□□ -1.94
CSF1	YLR087C	SGS1	P35187	1447 aa		2.91	□□□□□ -1.94
CSF1	YLR087C	NUP170	P38181	1502 aa		2.91	□□□□□ -1.94
CSF1	YLR087C	RPS0B	P46654	252 aa	Known RBP	2.91	□□□□□ -1.94
CSF1	YLR087C	YPR148C	Q06523	435 aa		2.9	□□□□□ -1.95
CSF1	YLR087C	ECM5	Q03214	1411 aa		2.89	□□□□□ -1.95
CSF1	YLR087C	PEP1	P32319	1579 aa		2.89	□□□□□ -1.95
CSF1	YLR087C	OCA5	P38738	679 aa		2.89	□□□□□ -1.95
CSF1	YLR087C	ORC1	P54784	914 aa	Predicted RBP	2.89	□□□□□ -1.95
CSF1	YLR087C	CEF1	Q03654	590 aa	Predicted RBP	2.89	□□□□□ -1.95
CSF1	YLR087C	HSC82	P15108	705 aa	Known RBP	2.89	□□□□□ -1.95
CSF1	YLR087C	TSC11	P40061	1430 aa		2.88	□□□□□ -1.95
CSF1	YLR087C	NOP15	P53927	220 aa	Predicted RBP	2.88	□□□□□ -1.95
CSF1	YLR087C	DPB3	P27344	201 aa		2.88	□□□□□ -1.95
CSF1	YLR087C	TAF2	P23255	1407 aa		2.88	□□□□□ -1.95
CSF1	YLR087C	TYW1	Q08960	810 aa	Known RBP	2.88	□□□□□ -1.95
CSF1	YLR087C	MYO2	P19524	1574 aa	Known RBP	2.88	□□□□□ -1.95
CSF1	YLR087C	CWC22	P53333	577 aa	Known RBP	2.88	□□□□□ -1.95
CSF1	YLR087C	EBP2	P36049	427 aa	Known RBP	2.87	□□□□□ -1.95
CSF1	YLR087C	RRP1	P35178	278 aa	Predicted RBP	2.87	□□□□□ -1.95

Retrieved 100 of 5,963 RNA–protein pairs in 48.7 ms