Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC16.67■□□□□ 0.26
NKX2-1P43699 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC16.67■□□□□ 0.26
NKX2-1P43699 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NKX2-1P43699 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NKX2-1P43699 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
NKX2-1P43699 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NKX2-1P43699 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NKX2-1P43699 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NKX2-1P43699 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NKX2-1P43699 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
NKX2-1P43699 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NKX2-1P43699 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC16.67■□□□□ 0.26
NKX2-1P43699 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
NKX2-1P43699 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NKX2-1P43699 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
NKX2-1P43699 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
NKX2-1P43699 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC16.67■□□□□ 0.26
NKX2-1P43699 SMUG1P1-201ENST00000590640 811 ntBASIC16.67■□□□□ 0.26
NKX2-1P43699 AL138724.1-201ENST00000606771 1088 ntBASIC16.67■□□□□ 0.26
NKX2-1P43699 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
NKX2-1P43699 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NKX2-1P43699 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
NKX2-1P43699 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
NKX2-1P43699 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
NKX2-1P43699 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC16.67■□□□□ 0.26
NKX2-1P43699 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
NKX2-1P43699 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
NKX2-1P43699 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NKX2-1P43699 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
NKX2-1P43699 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
NKX2-1P43699 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC16.66■□□□□ 0.26
NKX2-1P43699 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
NKX2-1P43699 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NKX2-1P43699 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC16.66■□□□□ 0.26
NKX2-1P43699 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC16.66■□□□□ 0.26
NKX2-1P43699 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC16.66■□□□□ 0.26
NKX2-1P43699 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NKX2-1P43699 SLC47A1P1-202ENST00000449666 945 ntBASIC16.66■□□□□ 0.26
NKX2-1P43699 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC16.66■□□□□ 0.26
NKX2-1P43699 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC16.66■□□□□ 0.26
NKX2-1P43699 AC098818.2-201ENST00000564925 2320 ntBASIC16.66■□□□□ 0.26
NKX2-1P43699 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
NKX2-1P43699 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NKX2-1P43699 ASL-203ENST00000380839 1765 ntTSL 5 BASIC16.66■□□□□ 0.26
NKX2-1P43699 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC16.66■□□□□ 0.26
NKX2-1P43699 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC16.66■□□□□ 0.26
NKX2-1P43699 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NKX2-1P43699 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NKX2-1P43699 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
NKX2-1P43699 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC16.65■□□□□ 0.26
NKX2-1P43699 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NKX2-1P43699 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
NKX2-1P43699 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
NKX2-1P43699 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NKX2-1P43699 SYT6-210ENST00000641643 1587 ntBASIC16.65■□□□□ 0.26
NKX2-1P43699 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
NKX2-1P43699 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
NKX2-1P43699 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
NKX2-1P43699 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NKX2-1P43699 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC16.65■□□□□ 0.26
NKX2-1P43699 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NKX2-1P43699 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC16.65■□□□□ 0.26
NKX2-1P43699 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC16.65■□□□□ 0.26
NKX2-1P43699 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
NKX2-1P43699 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC16.65■□□□□ 0.26
NKX2-1P43699 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
NKX2-1P43699 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NKX2-1P43699 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NKX2-1P43699 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NKX2-1P43699 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
NKX2-1P43699 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
NKX2-1P43699 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
NKX2-1P43699 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
NKX2-1P43699 STAC-204ENST00000457375 1366 ntTSL 2 BASIC16.64■□□□□ 0.26
NKX2-1P43699 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
NKX2-1P43699 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
NKX2-1P43699 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
NKX2-1P43699 AC009237.3-201ENST00000393279 1427 ntBASIC16.64■□□□□ 0.25
NKX2-1P43699 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC16.64■□□□□ 0.25
NKX2-1P43699 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
NKX2-1P43699 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC16.64■□□□□ 0.25
NKX2-1P43699 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC16.64■□□□□ 0.25
NKX2-1P43699 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC16.64■□□□□ 0.25
NKX2-1P43699 GRAMD4P7-201ENST00000578182 1232 ntBASIC16.64■□□□□ 0.25
NKX2-1P43699 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC16.64■□□□□ 0.25
NKX2-1P43699 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
NKX2-1P43699 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
NKX2-1P43699 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC16.64■□□□□ 0.25
NKX2-1P43699 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
NKX2-1P43699 PXK-203ENST00000383715 1756 ntTSL 5 BASIC16.64■□□□□ 0.25
NKX2-1P43699 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
NKX2-1P43699 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC16.64■□□□□ 0.25
NKX2-1P43699 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
NKX2-1P43699 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
NKX2-1P43699 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
NKX2-1P43699 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC16.64■□□□□ 0.25
NKX2-1P43699 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
NKX2-1P43699 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC16.63■□□□□ 0.25
NKX2-1P43699 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
NKX2-1P43699 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms