Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC14.49□□□□□ -0.092e-6■■■□□ 16.7
YBX3P16989 ANO10-201ENST00000292246 3212 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.682e-6■■■□□ 16.7
YBX3P16989 ANO10-212ENST00000448045 583 ntTSL 39.33□□□□□ -0.922e-6■■■□□ 16.7
YBX3P16989 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC17.97■□□□□ 0.471e-8■■■□□ 16.7
YBX3P16989 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC17.78■□□□□ 0.441e-8■■■□□ 16.7
YBX3P16989 SLC1A5-202ENST00000434726 1872 ntTSL 2 BASIC16.69■□□□□ 0.261e-8■■■□□ 16.7
YBX3P16989 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC5.95□□□□□ -1.464e-6■■■□□ 16.7
YBX3P16989 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.524e-6■■■□□ 16.7
YBX3P16989 BID-210ENST00000552886 330 ntTSL 318.44■□□□□ 0.542e-7■■■□□ 16.7
YBX3P16989 RNASEK-C17orf49-202ENST00000547863 1662 ntTSL 228.2■■■□□ 2.118e-7■■■□□ 16.7
YBX3P16989 RNASEK-C17orf49-203ENST00000549775 1856 ntTSL 524.94■■□□□ 1.588e-7■■■□□ 16.7
YBX3P16989 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.788e-7■■■□□ 16.7
YBX3P16989 NDUFA9-206ENST00000540688 642 ntTSL 2 BASIC14.57□□□□□ -0.086e-14■■■□□ 16.7
YBX3P16989 AC005833.3-201ENST00000543979 864 ntTSL 213.05□□□□□ -0.326e-14■■■□□ 16.7
YBX3P16989 AC005833.3-202ENST00000544741 770 ntAPPRIS P1 TSL 3 BASIC11.15□□□□□ -0.626e-14■■■□□ 16.7
YBX3P16989 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.424e-9■■■□□ 16.7
YBX3P16989 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.58□□□□□ -1.844e-9■■■□□ 16.7
YBX3P16989 SLC7A1-202ENST00000450494 547 ntTSL 223.15■■□□□ 1.33e-7■■■□□ 16.7
YBX3P16989 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.142e-6■■■□□ 16.7
YBX3P16989 PCNX3-202ENST00000439247 3104 ntTSL 1 (best)14.36□□□□□ -0.112e-6■■■□□ 16.7
YBX3P16989 DTL-201ENST00000366991 4573 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.427e-7■■■□□ 16.7
YBX3P16989 DTL-206ENST00000542077 4471 ntTSL 2 BASIC9.47□□□□□ -0.897e-7■■■□□ 16.7
YBX3P16989 DTL-203ENST00000475419 3662 ntTSL 25.27□□□□□ -1.577e-7■■■□□ 16.7
YBX3P16989 HSD17B10-205ENST00000495986 666 ntTSL 525.4■■□□□ 1.662e-6■■■□□ 16.7
YBX3P16989 STXBP1-214ENST00000635950 2771 ntTSL 520.5■□□□□ 0.872e-6■■■□□ 16.7
YBX3P16989 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC17.26■□□□□ 0.352e-6■■■□□ 16.7
YBX3P16989 STXBP1-201ENST00000373299 3765 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.122e-6■■■□□ 16.7
YBX3P16989 STXBP1-217ENST00000637060 3825 ntTSL 514.18□□□□□ -0.142e-6■■■□□ 16.7
YBX3P16989 STXBP1-202ENST00000373302 3967 ntTSL 1 (best) BASIC14.03□□□□□ -0.162e-6■■■□□ 16.7
YBX3P16989 STXBP1-218ENST00000637173 4193 ntTSL 5 BASIC12.59□□□□□ -0.392e-6■■■□□ 16.7
YBX3P16989 STXBP1-221ENST00000637953 3925 ntTSL 5 BASIC12.54□□□□□ -0.42e-6■■■□□ 16.7
YBX3P16989 STXBP1-219ENST00000637464 4893 ntTSL 512.53□□□□□ -0.42e-6■■■□□ 16.7
YBX3P16989 STXBP1-215ENST00000636509 3949 ntTSL 510.65□□□□□ -0.712e-6■■■□□ 16.7
YBX3P16989 STXBP1-209ENST00000626539 3840 ntTSL 5 BASIC10.61□□□□□ -0.712e-6■■■□□ 16.7
YBX3P16989 CSDE1-213ENST00000530784 545 ntTSL 210.66□□□□□ -0.72e-12■■■□□ 16.7
YBX3P16989 CSDE1-206ENST00000483030 873 ntTSL 210.39□□□□□ -0.752e-12■■■□□ 16.7
YBX3P16989 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC19.19■□□□□ 0.661e-7■■■□□ 16.7
YBX3P16989 MSMO1-201ENST00000261507 2269 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.281e-7■■■□□ 16.7
YBX3P16989 SLC5A6-213ENST00000461757 2307 ntTSL 218.68■□□□□ 0.585e-8■■■□□ 16.7
YBX3P16989 SLC38A5-208ENST00000494034 525 ntTSL 513.03□□□□□ -0.322e-11■■■□□ 16.7
YBX3P16989 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.212e-6■■■□□ 16.7
YBX3P16989 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC25.34■■□□□ 1.652e-6■■■□□ 16.7
YBX3P16989 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC19.67■□□□□ 0.742e-6■■■□□ 16.7
YBX3P16989 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC18.36■□□□□ 0.532e-6■■■□□ 16.7
YBX3P16989 MORC2-202ENST00000397641 5181 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.482e-6■■■□□ 16.7
YBX3P16989 MORC2-201ENST00000215862 4469 ntTSL 1 (best) BASIC10.39□□□□□ -0.752e-6■■■□□ 16.7
YBX3P16989 NUP43-201ENST00000340413 3874 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.091e-8■■■□□ 16.7
YBX3P16989 NF1-216ENST00000495910 8223 ntTSL 25.05□□□□□ -1.61e-6■■■□□ 16.7
YBX3P16989 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC9.51□□□□□ -0.892e-6■■■□□ 16.7
YBX3P16989 UBL4A-205ENST00000477777 629 ntTSL 223.27■■□□□ 1.323e-7■■■□□ 16.7
YBX3P16989 BUD31-207ENST00000471813 341 ntTSL 23.48□□□□□ -1.851e-8■■■□□ 16.7
YBX3P16989 MCUR1-203ENST00000607303 622 ntTSL 38.05□□□□□ -1.123e-12■■■□□ 16.7
YBX3P16989 RHOT1-208ENST00000580976 567 ntTSL 45.38□□□□□ -1.553e-7■■■□□ 16.7
YBX3P16989 KIAA0100-202ENST00000528896 7407 ntAPPRIS P2 TSL 1 (best) BASIC10.78□□□□□ -0.684e-7■■■□□ 16.7
YBX3P16989 KIAA0100-201ENST00000389003 6852 ntAPPRIS ALT2 TSL 5 BASIC7.62□□□□□ -1.194e-7■■■□□ 16.7
YBX3P16989 KIAA0100-203ENST00000544884 6856 ntAPPRIS ALT2 TSL 1 (best) BASIC7.58□□□□□ -1.24e-7■■■□□ 16.7
YBX3P16989 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC32.41■■■□□ 2.789e-9■■■□□ 16.7
YBX3P16989 TMEM147-204ENST00000477168 986 ntTSL 226.74■■□□□ 1.879e-9■■■□□ 16.7
YBX3P16989 ITGB5-207ENST00000481591 1202 ntTSL 525■■□□□ 1.596e-7■■■□□ 16.7
YBX3P16989 TMEM147-207ENST00000595467 1783 ntTSL 223.09■■□□□ 1.299e-9■■■□□ 16.7
YBX3P16989 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.279e-9■■■□□ 16.7
YBX3P16989 TMEM147-205ENST00000593027 669 ntTSL 322.55■■□□□ 1.29e-9■■■□□ 16.7
YBX3P16989 TMEM147-209ENST00000599895 1045 ntTSL 522.55■■□□□ 1.29e-9■■■□□ 16.7
YBX3P16989 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.596e-7■■■□□ 16.7
YBX3P16989 ITGB5-203ENST00000461306 577 ntTSL 415.3■□□□□ 0.046e-7■■■□□ 16.7
YBX3P16989 ITGB5-202ENST00000460797 2228 ntTSL 212.55□□□□□ -0.46e-7■■■□□ 16.7
YBX3P16989 NFATC3-206ENST00000539828 2484 ntTSL 217.67■□□□□ 0.421e-6■■■□□ 16.7
YBX3P16989 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC17.17■□□□□ 0.341e-6■■■□□ 16.7
YBX3P16989 NFATC3-213ENST00000563319 4122 ntTSL 1 (best)11.69□□□□□ -0.541e-6■■■□□ 16.7
YBX3P16989 NFATC3-204ENST00000379165 3583 ntTSL 211.01□□□□□ -0.651e-6■■■□□ 16.7
YBX3P16989 NFATC3-208ENST00000553077 3870 ntTSL 210.85□□□□□ -0.671e-6■■■□□ 16.7
YBX3P16989 NFATC3-220ENST00000569766 3555 ntTSL 1 (best)9.88□□□□□ -0.831e-6■■■□□ 16.7
YBX3P16989 NFATC3-221ENST00000570212 3181 ntTSL 1 (best)7.96□□□□□ -1.141e-6■■■□□ 16.7
YBX3P16989 NFATC3-207ENST00000549350 3588 ntTSL 27.34□□□□□ -1.231e-6■■■□□ 16.7
YBX3P16989 NFATC3-205ENST00000535127 4194 ntTSL 1 (best)7.32□□□□□ -1.241e-6■■■□□ 16.7
YBX3P16989 NFATC3-216ENST00000566301 3840 ntTSL 1 (best)7.27□□□□□ -1.251e-6■■■□□ 16.7
YBX3P16989 NFATC3-211ENST00000562926 3748 ntTSL 1 (best)6.91□□□□□ -1.31e-6■■■□□ 16.7
YBX3P16989 NFATC3-212ENST00000563288 3790 ntTSL 1 (best)6.56□□□□□ -1.361e-6■■■□□ 16.7
YBX3P16989 NFATC3-214ENST00000563796 3753 ntTSL 1 (best)5.91□□□□□ -1.461e-6■■■□□ 16.7
YBX3P16989 NFATC3-218ENST00000567152 3186 ntTSL 1 (best)5.66□□□□□ -1.51e-6■■■□□ 16.7
YBX3P16989 DPH3-203ENST00000462982 738 ntTSL 214.57□□□□□ -0.084e-14■■■□□ 16.7
YBX3P16989 DPH3-201ENST00000285082 1178 ntTSL 1 (best)9.78□□□□□ -0.844e-14■■■□□ 16.7
YBX3P16989 DPH3-202ENST00000383775 3052 ntTSL 2 BASIC9.63□□□□□ -0.874e-14■■■□□ 16.7
YBX3P16989 DPH3-204ENST00000488423 3131 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.884e-14■■■□□ 16.7
YBX3P16989 LRPPRC-201ENST00000260665 6335 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.441e-8■■■□□ 16.6
YBX3P16989 TLN1-207ENST00000489255 798 ntTSL 216.64■□□□□ 0.251e-13■■■□□ 16.6
YBX3P16989 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.288e-7■■■□□ 16.6
YBX3P16989 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.86■□□□□ 0.938e-7■■■□□ 16.6
YBX3P16989 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.78e-7■■■□□ 16.6
YBX3P16989 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC22.85■■□□□ 1.258e-8■■■□□ 16.6
YBX3P16989 MRPS16-204ENST00000473427 612 ntTSL 322.69■■□□□ 1.228e-8■■■□□ 16.6
YBX3P16989 MRPS16-205ENST00000479005 2580 ntTSL 215.38■□□□□ 0.058e-8■■■□□ 16.6
YBX3P16989 MRPS16-202ENST00000372945 2634 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.128e-8■■■□□ 16.6
YBX3P16989 MRPS16-203ENST00000471251 658 ntTSL 29.72□□□□□ -0.858e-8■■■□□ 16.6
YBX3P16989 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC24.69■■□□□ 1.546e-8■■■□□ 16.6
YBX3P16989 RPH3AL-205ENST00000570893 594 ntTSL 320.97■□□□□ 0.956e-8■■■□□ 16.6
YBX3P16989 RPH3AL-219ENST00000576001 647 ntTSL 320.23■□□□□ 0.836e-8■■■□□ 16.6
YBX3P16989 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC17.5■□□□□ 0.396e-8■■■□□ 16.6
YBX3P16989 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC16.09■□□□□ 0.176e-8■■■□□ 16.6
YBX3P16989 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC15.74■□□□□ 0.116e-8■■■□□ 16.6
Retrieved 100 of 29,075 protein–RNA pairs in 395.4 ms