RNA–Protein interactions for RNA: ENST00000530784.1

CSDE1-213, Transcript of cold shock domain containing E1, humanhuman

TSL 2

Gene CSDE1, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-213ENST00000530784 AEBP2Q6ZN18 517 aaPredicted RBP39.25■■■■□ 3.87
CSDE1-213ENST00000530784 CHIC1Q5VXU3 224 aa38.14■■■■□ 3.7
CSDE1-213ENST00000530784 PHF23Q9BUL5 403 aaPredicted RBP33.57■■■□□ 2.96
CSDE1-213ENST00000530784 SENP3Q9H4L4 574 aaPredicted RBP33.27■■■□□ 2.92
CSDE1-213ENST00000530784 FOXD1Q16676 465 aa30.94■■■□□ 2.54
CSDE1-213ENST00000530784 PLPPR3Q6T4P5 718 aa30.88■■■□□ 2.53
CSDE1-213ENST00000530784 PPP6R1Q9UPN7 881 aa29.69■■■□□ 2.34
CSDE1-213ENST00000530784 ADRA2BP18089 450 aa29.64■■■□□ 2.34
CSDE1-213ENST00000530784 PIAS4Q8N2W9 510 aaPredicted RBP29.13■■■□□ 2.25
CSDE1-213ENST00000530784 MSH5O43196 834 aa28.54■■■□□ 2.16
CSDE1-213ENST00000530784 PPP4R3CPQ6ZMV5 832 aa27.22■■□□□ 1.95
CSDE1-213ENST00000530784 SCAF1Q9H7N4 1312 aaKnown RBP27.05■■□□□ 1.92
CSDE1-213ENST00000530784 MAPK8IP2Q13387 824 aaPredicted RBP26.96■■□□□ 1.91
CSDE1-213ENST00000530784 DMRT2Q9Y5R5 561 aa26.54■■□□□ 1.84
CSDE1-213ENST00000530784 CNKSR2Q8WXI2 1034 aa26.47■■□□□ 1.83
CSDE1-213ENST00000530784 KCNA4P22459 653 aa26.42■■□□□ 1.82
CSDE1-213ENST00000530784 NCBP3Q53F19 620 aaKnown RBP26.42■■□□□ 1.82
CSDE1-213ENST00000530784 POTEDQ86YR6 584 aa26.32■■□□□ 1.8
CSDE1-213ENST00000530784 NPM3O75607 178 aaKnown RBP26.07■■□□□ 1.76
CSDE1-213ENST00000530784 RNF216Q9NWF9 866 aaPredicted RBP25.99■■□□□ 1.75
CSDE1-213ENST00000530784 HOXD11P31277 338 aaPredicted RBP25.93■■□□□ 1.74
CSDE1-213ENST00000530784 DCAF8L1A6NGE4 600 aa25.44■■□□□ 1.66
CSDE1-213ENST00000530784 DNAJC5BQ9UF47 199 aa25.28■■□□□ 1.64
CSDE1-213ENST00000530784 SLC4A1APQ9BWU0 796 aaKnown RBP25.11■■□□□ 1.61
CSDE1-213ENST00000530784 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.73■■□□□ 1.55
CSDE1-213ENST00000530784 SLC4A2P04920 1241 aa24.68■■□□□ 1.54
CSDE1-213ENST00000530784 RNF39Q9H2S5 420 aa24.47■■□□□ 1.51
CSDE1-213ENST00000530784 ZBTB22O15209 634 aa24.33■■□□□ 1.49
CSDE1-213ENST00000530784 FOXD4L1Q9NU39 408 aa24.33■■□□□ 1.49
CSDE1-213ENST00000530784 U3KPZ7 1027 aaPredicted RBP24.32■■□□□ 1.48
CSDE1-213ENST00000530784 EHMT2Q96KQ7 1210 aa24.25■■□□□ 1.47
CSDE1-213ENST00000530784 C1QBPQ07021 282 aaKnown RBP24.14■■□□□ 1.45
CSDE1-213ENST00000530784 MYCNP04198 464 aaPredicted RBP24.06■■□□□ 1.44
CSDE1-213ENST00000530784 CSRNP3Q8WYN3 585 aa24.04■■□□□ 1.44
CSDE1-213ENST00000530784 CACNB1Q02641 598 aaPredicted RBP23.96■■□□□ 1.43
CSDE1-213ENST00000530784 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.89■■□□□ 1.41
CSDE1-213ENST00000530784 HNRNPUL2Q1KMD3 747 aaKnown RBP23.89■■□□□ 1.41
CSDE1-213ENST00000530784 SAMD1Q6SPF0 538 aaPredicted RBP23.82■■□□□ 1.4
CSDE1-213ENST00000530784 SPINK5Q9NQ38 1064 aaPredicted RBP23.71■■□□□ 1.39
CSDE1-213ENST00000530784 APLP2Q06481 763 aa23.66■■□□□ 1.38
CSDE1-213ENST00000530784 CAPN15O75808 1086 aa23.6■■□□□ 1.37
CSDE1-213ENST00000530784 ATF5Q9Y2D1 282 aaPredicted RBP23.5■■□□□ 1.35
CSDE1-213ENST00000530784 ATXN8OSP0DMR3 200 aa23.47■■□□□ 1.35
CSDE1-213ENST00000530784 TRHP20396 242 aaPredicted RBP23.46■■□□□ 1.35
CSDE1-213ENST00000530784 ZNF219Q9P2Y4 722 aaPredicted RBP23.4■■□□□ 1.34
CSDE1-213ENST00000530784 DSG3P32926 999 aa23.24■■□□□ 1.31
CSDE1-213ENST00000530784 ABCB7O75027 752 aa23.16■■□□□ 1.3
CSDE1-213ENST00000530784 POLA2Q14181 598 aa23.04■■□□□ 1.28
CSDE1-213ENST00000530784 ZBTB12Q9Y330 459 aaPredicted RBP22.58■■□□□ 1.21
CSDE1-213ENST00000530784 MKRN4PQ13434 485 aaPredicted RBP22.46■■□□□ 1.19
CSDE1-213ENST00000530784 FBLN2P98095 1184 aa22.45■■□□□ 1.18
CSDE1-213ENST00000530784 OSCARQ8IYS5 282 aa22.26■■□□□ 1.15
CSDE1-213ENST00000530784 RBM42Q9BTD8 480 aaKnown RBP22.1■■□□□ 1.13
CSDE1-213ENST00000530784 SPDYE2BA6NHP3 402 aa21.99■■□□□ 1.11
CSDE1-213ENST00000530784 SPDYE6P0CI01 402 aa21.99■■□□□ 1.11
CSDE1-213ENST00000530784 SPDYE2Q495Y8 402 aa21.99■■□□□ 1.11
CSDE1-213ENST00000530784 ZNF692Q9BU19 519 aaPredicted RBP21.9■■□□□ 1.1
CSDE1-213ENST00000530784 SPDYE4A6NLX3 237 aa21.85■■□□□ 1.09
CSDE1-213ENST00000530784 AKT1S1Q96B36 256 aa21.82■■□□□ 1.08
CSDE1-213ENST00000530784 SSUH2Q9Y2M2 353 aa21.81■■□□□ 1.08
CSDE1-213ENST00000530784 FKBP8Q14318 412 aa21.73■■□□□ 1.07
CSDE1-213ENST00000530784 REM2Q8IYK8 340 aaPredicted RBP21.64■■□□□ 1.05
CSDE1-213ENST00000530784 PABPN1Q86U42 306 aaKnown RBP eCLIP21.62■■□□□ 1.05
CSDE1-213ENST00000530784 PROM2Q8N271 834 aa21.45■■□□□ 1.02
CSDE1-213ENST00000530784 PITPNM1O00562 1244 aa21.4■■□□□ 1.02
CSDE1-213ENST00000530784 SPDYE1Q8NFV5 336 aaPredicted RBP21.37■■□□□ 1.01
CSDE1-213ENST00000530784 CLEC11AQ9Y240 323 aa21.33■■□□□ 1.01
CSDE1-213ENST00000530784 CHRDL2Q6WN34 429 aa21.29■■□□□ 1
CSDE1-213ENST00000530784 STAG3Q9UJ98 1225 aa21.18■□□□□ 0.98
CSDE1-213ENST00000530784 PRR29P0C7W0 189 aa21.1■□□□□ 0.97
CSDE1-213ENST00000530784 FXR2P51116 673 aaKnown RBP eCLIP21.01■□□□□ 0.952e-8■□□□□ 10.1
CSDE1-213ENST00000530784 PIP4P2Q8N4L2 257 aa21■□□□□ 0.95
CSDE1-213ENST00000530784 FBXO3Q9UK99 471 aa20.95■□□□□ 0.94
CSDE1-213ENST00000530784 PRKAR2AP13861 404 aaKnown RBP20.85■□□□□ 0.93
CSDE1-213ENST00000530784 CHADLQ6NUI6 762 aa20.85■□□□□ 0.93
CSDE1-213ENST00000530784 CREBZFQ9NS37 354 aa20.81■□□□□ 0.92
CSDE1-213ENST00000530784 POTEHQ6S545 545 aa20.8■□□□□ 0.92
CSDE1-213ENST00000530784 MIER1Q8N108 512 aa20.75■□□□□ 0.91
CSDE1-213ENST00000530784 VASPP50552 380 aaPredicted RBP20.71■□□□□ 0.91
CSDE1-213ENST00000530784 PLCD3Q8N3E9 789 aa20.69■□□□□ 0.9
CSDE1-213ENST00000530784 FARP1Q9Y4F1 1045 aaPredicted RBP20.61■□□□□ 0.89
CSDE1-213ENST00000530784 PLEKHG5O94827 1062 aa20.59■□□□□ 0.89
CSDE1-213ENST00000530784 MNX1P50219 401 aaPredicted RBP20.58■□□□□ 0.89
CSDE1-213ENST00000530784 IFNLR1Q8IU57 520 aaPredicted RBP20.44■□□□□ 0.86
CSDE1-213ENST00000530784 NPM1P06748 294 aaKnown RBP eCLIP20.42■□□□□ 0.86
CSDE1-213ENST00000530784 ZBTB47Q9UFB7 747 aaPredicted RBP20.42■□□□□ 0.86
CSDE1-213ENST00000530784 KLHL34Q8N239 644 aa20.4■□□□□ 0.86
CSDE1-213ENST00000530784 HAX1O00165 279 aa20.36■□□□□ 0.85
CSDE1-213ENST00000530784 C19orf67A6NJJ6 358 aa20.31■□□□□ 0.84
CSDE1-213ENST00000530784 CD44P16070 742 aaKnown RBP20.24■□□□□ 0.83
CSDE1-213ENST00000530784 NUBP1P53384 320 aa20.24■□□□□ 0.83
CSDE1-213ENST00000530784 EVX2Q03828 476 aa20.22■□□□□ 0.83
CSDE1-213ENST00000530784 RASEFQ8IZ41 740 aa20.2■□□□□ 0.82
CSDE1-213ENST00000530784 SPOCK2Q92563 424 aa20.19■□□□□ 0.82
CSDE1-213ENST00000530784 TSPYL2Q9H2G4 693 aaPredicted RBP20.13■□□□□ 0.81
CSDE1-213ENST00000530784 ZRANB1Q9UGI0 708 aa20.11■□□□□ 0.81
CSDE1-213ENST00000530784 PAK3O75914 559 aaPredicted RBP20.1■□□□□ 0.81
CSDE1-213ENST00000530784 FAM212AQ96EL1 285 aa20.04■□□□□ 0.8
CSDE1-213ENST00000530784 DCAF8Q5TAQ9 597 aa20.02■□□□□ 0.8
CSDE1-213ENST00000530784 CCDC61Q9Y6R9 512 aa19.97■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 87.8 ms