Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC25.76■■□□□ 1.71
NPHP1O15259 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC25.76■■□□□ 1.71
NPHP1O15259 AC124016.1-201ENST00000609552 612 ntBASIC25.76■■□□□ 1.71
NPHP1O15259 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC25.76■■□□□ 1.71
NPHP1O15259 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
NPHP1O15259 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
NPHP1O15259 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
NPHP1O15259 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
NPHP1O15259 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
NPHP1O15259 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
NPHP1O15259 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC25.75■■□□□ 1.71
NPHP1O15259 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
NPHP1O15259 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
NPHP1O15259 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC25.75■■□□□ 1.71
NPHP1O15259 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC25.75■■□□□ 1.71
NPHP1O15259 AL390719.1-204ENST00000412397 1219 ntBASIC25.75■■□□□ 1.71
NPHP1O15259 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC25.75■■□□□ 1.71
NPHP1O15259 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC25.75■■□□□ 1.71
NPHP1O15259 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC25.75■■□□□ 1.71
NPHP1O15259 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
NPHP1O15259 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC25.75■■□□□ 1.71
NPHP1O15259 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC25.74■■□□□ 1.71
NPHP1O15259 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC25.74■■□□□ 1.71
NPHP1O15259 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
NPHP1O15259 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC25.74■■□□□ 1.71
NPHP1O15259 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC25.74■■□□□ 1.71
NPHP1O15259 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
NPHP1O15259 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
NPHP1O15259 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC25.74■■□□□ 1.71
NPHP1O15259 AC087633.2-202ENST00000565166 1439 ntBASIC25.74■■□□□ 1.71
NPHP1O15259 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC25.74■■□□□ 1.71
NPHP1O15259 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
NPHP1O15259 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
NPHP1O15259 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC25.74■■□□□ 1.71
NPHP1O15259 BRWD1-AS2-201ENST00000603064 1028 ntBASIC25.74■■□□□ 1.71
NPHP1O15259 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC25.74■■□□□ 1.71
NPHP1O15259 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
NPHP1O15259 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
NPHP1O15259 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC25.73■■□□□ 1.71
NPHP1O15259 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
NPHP1O15259 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC25.73■■□□□ 1.71
NPHP1O15259 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC25.73■■□□□ 1.71
NPHP1O15259 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC25.73■■□□□ 1.71
NPHP1O15259 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC25.73■■□□□ 1.71
NPHP1O15259 KRASP1-201ENST00000407852 552 ntBASIC25.73■■□□□ 1.71
NPHP1O15259 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC25.73■■□□□ 1.71
NPHP1O15259 AC120498.8-201ENST00000614275 531 ntBASIC25.73■■□□□ 1.71
NPHP1O15259 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC25.73■■□□□ 1.71
NPHP1O15259 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC25.73■■□□□ 1.71
NPHP1O15259 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC25.72■■□□□ 1.71
NPHP1O15259 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC25.72■■□□□ 1.71
NPHP1O15259 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC25.72■■□□□ 1.71
NPHP1O15259 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC25.72■■□□□ 1.71
NPHP1O15259 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
NPHP1O15259 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
NPHP1O15259 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC25.72■■□□□ 1.71
NPHP1O15259 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC25.72■■□□□ 1.71
NPHP1O15259 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC25.72■■□□□ 1.71
NPHP1O15259 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC25.72■■□□□ 1.71
NPHP1O15259 AL049637.2-201ENST00000641778 930 ntBASIC25.72■■□□□ 1.71
NPHP1O15259 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
NPHP1O15259 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
NPHP1O15259 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC25.72■■□□□ 1.71
NPHP1O15259 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC25.72■■□□□ 1.71
NPHP1O15259 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
NPHP1O15259 AL135905.2-201ENST00000584934 1404 ntBASIC25.71■■□□□ 1.71
NPHP1O15259 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
NPHP1O15259 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
NPHP1O15259 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC25.71■■□□□ 1.71
NPHP1O15259 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
NPHP1O15259 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
NPHP1O15259 DHDH-203ENST00000522614 776 ntTSL 5 BASIC25.71■■□□□ 1.71
NPHP1O15259 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC25.71■■□□□ 1.71
NPHP1O15259 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC25.71■■□□□ 1.71
NPHP1O15259 AC010331.1-201ENST00000611423 582 ntBASIC25.71■■□□□ 1.71
NPHP1O15259 AC110285.5-201ENST00000611501 352 ntBASIC25.71■■□□□ 1.71
NPHP1O15259 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
NPHP1O15259 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
NPHP1O15259 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
NPHP1O15259 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
NPHP1O15259 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC25.71■■□□□ 1.71
NPHP1O15259 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC25.7■■□□□ 1.71
NPHP1O15259 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC25.7■■□□□ 1.71
NPHP1O15259 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
NPHP1O15259 SERF2-207ENST00000409614 582 ntTSL 2 BASIC25.7■■□□□ 1.7
NPHP1O15259 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC25.7■■□□□ 1.7
NPHP1O15259 SERP1-205ENST00000487153 657 ntTSL 4 BASIC25.7■■□□□ 1.7
NPHP1O15259 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC25.7■■□□□ 1.7
NPHP1O15259 AC005829.2-201ENST00000571422 1056 ntBASIC25.7■■□□□ 1.7
NPHP1O15259 MIR4785-201ENST00000585005 73 ntBASIC25.7■■□□□ 1.7
NPHP1O15259 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
NPHP1O15259 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC25.7■■□□□ 1.7
NPHP1O15259 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC25.7■■□□□ 1.7
NPHP1O15259 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC25.7■■□□□ 1.7
NPHP1O15259 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC25.7■■□□□ 1.7
NPHP1O15259 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
NPHP1O15259 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
NPHP1O15259 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
NPHP1O15259 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
NPHP1O15259 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC25.69■■□□□ 1.7
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms