Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
CHKB-CPT1BH3BT56 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
CHKB-CPT1BH3BT56 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC11.39□□□□□ -0.59
CHKB-CPT1BH3BT56 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
CHKB-CPT1BH3BT56 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC11.39□□□□□ -0.59
CHKB-CPT1BH3BT56 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC11.39□□□□□ -0.59
CHKB-CPT1BH3BT56 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
CHKB-CPT1BH3BT56 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC11.39□□□□□ -0.59
CHKB-CPT1BH3BT56 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC11.39□□□□□ -0.59
CHKB-CPT1BH3BT56 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
CHKB-CPT1BH3BT56 MCC-201ENST00000302475 8257 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
CHKB-CPT1BH3BT56 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
CHKB-CPT1BH3BT56 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC11.39□□□□□ -0.59
CHKB-CPT1BH3BT56 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC11.39□□□□□ -0.59
CHKB-CPT1BH3BT56 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC11.39□□□□□ -0.59
CHKB-CPT1BH3BT56 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
CHKB-CPT1BH3BT56 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC11.39□□□□□ -0.59
CHKB-CPT1BH3BT56 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC11.39□□□□□ -0.59
CHKB-CPT1BH3BT56 MIR6090-201ENST00000622481 60 ntBASIC11.39□□□□□ -0.59
CHKB-CPT1BH3BT56 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
CHKB-CPT1BH3BT56 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC11.39□□□□□ -0.59
CHKB-CPT1BH3BT56 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC11.39□□□□□ -0.59
CHKB-CPT1BH3BT56 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
CHKB-CPT1BH3BT56 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
CHKB-CPT1BH3BT56 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC11.39□□□□□ -0.59
CHKB-CPT1BH3BT56 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
CHKB-CPT1BH3BT56 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC11.39□□□□□ -0.59
CHKB-CPT1BH3BT56 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC11.39□□□□□ -0.59
CHKB-CPT1BH3BT56 CACNA1I-202ENST00000402142 10004 ntAPPRIS P4 TSL 1 (best) BASIC11.39□□□□□ -0.59
CHKB-CPT1BH3BT56 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC11.39□□□□□ -0.59
CHKB-CPT1BH3BT56 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
CHKB-CPT1BH3BT56 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
CHKB-CPT1BH3BT56 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC11.39□□□□□ -0.59
CHKB-CPT1BH3BT56 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
CHKB-CPT1BH3BT56 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
CHKB-CPT1BH3BT56 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
CHKB-CPT1BH3BT56 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
CHKB-CPT1BH3BT56 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
CHKB-CPT1BH3BT56 HIPK3-202ENST00000379016 7345 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
CHKB-CPT1BH3BT56 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
CHKB-CPT1BH3BT56 AC244015.2-201ENST00000616358 1861 ntBASIC11.38□□□□□ -0.59
CHKB-CPT1BH3BT56 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
CHKB-CPT1BH3BT56 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC11.38□□□□□ -0.59
CHKB-CPT1BH3BT56 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC11.38□□□□□ -0.59
CHKB-CPT1BH3BT56 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC11.38□□□□□ -0.59
CHKB-CPT1BH3BT56 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC11.38□□□□□ -0.59
CHKB-CPT1BH3BT56 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC11.38□□□□□ -0.59
CHKB-CPT1BH3BT56 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC11.38□□□□□ -0.59
CHKB-CPT1BH3BT56 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC11.38□□□□□ -0.59
CHKB-CPT1BH3BT56 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC11.38□□□□□ -0.59
CHKB-CPT1BH3BT56 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC11.38□□□□□ -0.59
CHKB-CPT1BH3BT56 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
CHKB-CPT1BH3BT56 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC11.38□□□□□ -0.59
CHKB-CPT1BH3BT56 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
CHKB-CPT1BH3BT56 MIR762-201ENST00000390236 83 ntBASIC11.38□□□□□ -0.59
CHKB-CPT1BH3BT56 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC11.38□□□□□ -0.59
CHKB-CPT1BH3BT56 SETD8P1-201ENST00000623146 1180 ntBASIC11.38□□□□□ -0.59
CHKB-CPT1BH3BT56 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC11.38□□□□□ -0.59
CHKB-CPT1BH3BT56 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
CHKB-CPT1BH3BT56 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC11.38□□□□□ -0.59
CHKB-CPT1BH3BT56 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC11.38□□□□□ -0.59
CHKB-CPT1BH3BT56 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
CHKB-CPT1BH3BT56 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC11.38□□□□□ -0.59
CHKB-CPT1BH3BT56 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
CHKB-CPT1BH3BT56 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
CHKB-CPT1BH3BT56 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC11.38□□□□□ -0.59
CHKB-CPT1BH3BT56 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
CHKB-CPT1BH3BT56 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC11.38□□□□□ -0.59
CHKB-CPT1BH3BT56 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
CHKB-CPT1BH3BT56 AL139384.1-201ENST00000612143 3047 ntBASIC11.38□□□□□ -0.59
CHKB-CPT1BH3BT56 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
CHKB-CPT1BH3BT56 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC11.38□□□□□ -0.59
CHKB-CPT1BH3BT56 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CHKB-CPT1BH3BT56 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
CHKB-CPT1BH3BT56 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CHKB-CPT1BH3BT56 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC11.37□□□□□ -0.59
CHKB-CPT1BH3BT56 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CHKB-CPT1BH3BT56 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
CHKB-CPT1BH3BT56 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CHKB-CPT1BH3BT56 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CHKB-CPT1BH3BT56 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC11.37□□□□□ -0.59
CHKB-CPT1BH3BT56 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
CHKB-CPT1BH3BT56 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC11.37□□□□□ -0.59
CHKB-CPT1BH3BT56 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CHKB-CPT1BH3BT56 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
CHKB-CPT1BH3BT56 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
CHKB-CPT1BH3BT56 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC11.37□□□□□ -0.59
CHKB-CPT1BH3BT56 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CHKB-CPT1BH3BT56 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CHKB-CPT1BH3BT56 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC11.37□□□□□ -0.59
CHKB-CPT1BH3BT56 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC11.37□□□□□ -0.59
CHKB-CPT1BH3BT56 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
CHKB-CPT1BH3BT56 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CHKB-CPT1BH3BT56 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CHKB-CPT1BH3BT56 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC11.37□□□□□ -0.59
CHKB-CPT1BH3BT56 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC11.37□□□□□ -0.59
CHKB-CPT1BH3BT56 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CHKB-CPT1BH3BT56 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC11.37□□□□□ -0.59
CHKB-CPT1BH3BT56 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
CHKB-CPT1BH3BT56 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Retrieved 100 of 98,524 protein–RNA pairs in 75.2 ms