Protein–RNA interactions for Protein: A6NKF7

TMEM88B, Transmembrane protein 88B, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM88BA6NKF7 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC24.05■■□□□ 1.44
TMEM88BA6NKF7 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
TMEM88BA6NKF7 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
TMEM88BA6NKF7 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
TMEM88BA6NKF7 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
TMEM88BA6NKF7 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
TMEM88BA6NKF7 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC24.04■■□□□ 1.44
TMEM88BA6NKF7 AL450487.1-201ENST00000426799 995 ntBASIC24.04■■□□□ 1.44
TMEM88BA6NKF7 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC24.04■■□□□ 1.44
TMEM88BA6NKF7 DUSP5P1-201ENST00000441325 1139 ntBASIC24.04■■□□□ 1.44
TMEM88BA6NKF7 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC24.04■■□□□ 1.44
TMEM88BA6NKF7 PP7080-204ENST00000510714 601 ntTSL 3 BASIC24.04■■□□□ 1.44
TMEM88BA6NKF7 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC24.04■■□□□ 1.44
TMEM88BA6NKF7 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC24.04■■□□□ 1.44
TMEM88BA6NKF7 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC24.04■■□□□ 1.44
TMEM88BA6NKF7 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
TMEM88BA6NKF7 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
TMEM88BA6NKF7 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
TMEM88BA6NKF7 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC24.04■■□□□ 1.44
TMEM88BA6NKF7 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
TMEM88BA6NKF7 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC24.04■■□□□ 1.44
TMEM88BA6NKF7 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC24.04■■□□□ 1.44
TMEM88BA6NKF7 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
TMEM88BA6NKF7 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
TMEM88BA6NKF7 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
TMEM88BA6NKF7 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC24.03■■□□□ 1.44
TMEM88BA6NKF7 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC24.03■■□□□ 1.44
TMEM88BA6NKF7 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC24.03■■□□□ 1.44
TMEM88BA6NKF7 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
TMEM88BA6NKF7 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
TMEM88BA6NKF7 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC24.03■■□□□ 1.44
TMEM88BA6NKF7 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC24.03■■□□□ 1.44
TMEM88BA6NKF7 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
TMEM88BA6NKF7 IPPK-202ENST00000375522 882 ntTSL 3 BASIC24.03■■□□□ 1.44
TMEM88BA6NKF7 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
TMEM88BA6NKF7 PGM5P4-201ENST00000421970 445 ntBASIC24.03■■□□□ 1.44
TMEM88BA6NKF7 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC24.03■■□□□ 1.44
TMEM88BA6NKF7 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC24.03■■□□□ 1.44
TMEM88BA6NKF7 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC24.03■■□□□ 1.44
TMEM88BA6NKF7 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
TMEM88BA6NKF7 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC24.03■■□□□ 1.44
TMEM88BA6NKF7 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
TMEM88BA6NKF7 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC24.03■■□□□ 1.44
TMEM88BA6NKF7 AC139530.1-201ENST00000575312 1977 ntBASIC24.03■■□□□ 1.44
TMEM88BA6NKF7 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
TMEM88BA6NKF7 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
TMEM88BA6NKF7 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC24.02■■□□□ 1.44
TMEM88BA6NKF7 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
TMEM88BA6NKF7 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC24.02■■□□□ 1.44
TMEM88BA6NKF7 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC24.02■■□□□ 1.44
TMEM88BA6NKF7 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC24.02■■□□□ 1.44
TMEM88BA6NKF7 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC24.02■■□□□ 1.44
TMEM88BA6NKF7 AC004264.1-201ENST00000608354 794 ntBASIC24.02■■□□□ 1.44
TMEM88BA6NKF7 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC24.02■■□□□ 1.44
TMEM88BA6NKF7 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
TMEM88BA6NKF7 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
TMEM88BA6NKF7 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC24.02■■□□□ 1.43
TMEM88BA6NKF7 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
TMEM88BA6NKF7 BX664615.1-201ENST00000443558 458 ntBASIC24.01■■□□□ 1.43
TMEM88BA6NKF7 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC24.01■■□□□ 1.43
TMEM88BA6NKF7 AP000550.4-202ENST00000639755 178 ntBASIC24.01■■□□□ 1.43
TMEM88BA6NKF7 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
TMEM88BA6NKF7 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
TMEM88BA6NKF7 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
TMEM88BA6NKF7 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
TMEM88BA6NKF7 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC24■■□□□ 1.43
TMEM88BA6NKF7 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC24■■□□□ 1.43
TMEM88BA6NKF7 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
TMEM88BA6NKF7 AL031133.1-201ENST00000406807 723 ntBASIC24■■□□□ 1.43
TMEM88BA6NKF7 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
TMEM88BA6NKF7 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC24■■□□□ 1.43
TMEM88BA6NKF7 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC24■■□□□ 1.43
TMEM88BA6NKF7 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC24■■□□□ 1.43
TMEM88BA6NKF7 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC24■■□□□ 1.43
TMEM88BA6NKF7 CLN6-204ENST00000564752 900 ntTSL 3 BASIC24■■□□□ 1.43
TMEM88BA6NKF7 CR392000.1-201ENST00000624770 1228 ntBASIC24■■□□□ 1.43
TMEM88BA6NKF7 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC24■■□□□ 1.43
TMEM88BA6NKF7 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC24■■□□□ 1.43
TMEM88BA6NKF7 MYC-208ENST00000641036 567 ntBASIC24■■□□□ 1.43
TMEM88BA6NKF7 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC24■■□□□ 1.43
TMEM88BA6NKF7 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC24■■□□□ 1.43
TMEM88BA6NKF7 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC23.99■■□□□ 1.43
TMEM88BA6NKF7 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC23.99■■□□□ 1.43
TMEM88BA6NKF7 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC23.99■■□□□ 1.43
TMEM88BA6NKF7 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
TMEM88BA6NKF7 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC23.99■■□□□ 1.43
TMEM88BA6NKF7 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
TMEM88BA6NKF7 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC23.99■■□□□ 1.43
TMEM88BA6NKF7 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC23.99■■□□□ 1.43
TMEM88BA6NKF7 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
TMEM88BA6NKF7 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
TMEM88BA6NKF7 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC23.99■■□□□ 1.43
TMEM88BA6NKF7 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
TMEM88BA6NKF7 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
TMEM88BA6NKF7 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
TMEM88BA6NKF7 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC23.98■■□□□ 1.43
TMEM88BA6NKF7 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC23.98■■□□□ 1.43
TMEM88BA6NKF7 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
TMEM88BA6NKF7 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC23.98■■□□□ 1.43
TMEM88BA6NKF7 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC23.98■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms