Protein–RNA interactions for Protein: S4R434

TMEM56-RWDD3, TMEM56-RWDD3 readthrough, humanhuman

Predictions only

Length 201 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM56-RWDD3S4R434 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC21.47■■□□□ 1.03
TMEM56-RWDD3S4R434 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
TMEM56-RWDD3S4R434 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
TMEM56-RWDD3S4R434 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC21.47■■□□□ 1.03
TMEM56-RWDD3S4R434 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
TMEM56-RWDD3S4R434 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
TMEM56-RWDD3S4R434 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
TMEM56-RWDD3S4R434 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC21.46■■□□□ 1.03
TMEM56-RWDD3S4R434 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
TMEM56-RWDD3S4R434 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
TMEM56-RWDD3S4R434 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC21.45■■□□□ 1.02
TMEM56-RWDD3S4R434 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
TMEM56-RWDD3S4R434 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
TMEM56-RWDD3S4R434 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
TMEM56-RWDD3S4R434 AL121749.1-202ENST00000609313 2153 ntBASIC21.44■■□□□ 1.02
TMEM56-RWDD3S4R434 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
TMEM56-RWDD3S4R434 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
TMEM56-RWDD3S4R434 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
TMEM56-RWDD3S4R434 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
TMEM56-RWDD3S4R434 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
TMEM56-RWDD3S4R434 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TMEM56-RWDD3S4R434 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
TMEM56-RWDD3S4R434 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC21.43■■□□□ 1.02
TMEM56-RWDD3S4R434 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
TMEM56-RWDD3S4R434 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TMEM56-RWDD3S4R434 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC21.42■■□□□ 1.02
TMEM56-RWDD3S4R434 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC21.42■■□□□ 1.02
TMEM56-RWDD3S4R434 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC21.41■■□□□ 1.02
TMEM56-RWDD3S4R434 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
TMEM56-RWDD3S4R434 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TMEM56-RWDD3S4R434 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
TMEM56-RWDD3S4R434 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
TMEM56-RWDD3S4R434 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
TMEM56-RWDD3S4R434 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
TMEM56-RWDD3S4R434 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
TMEM56-RWDD3S4R434 WASH5P-204ENST00000632292 975 ntBASIC21.38■■□□□ 1.01
TMEM56-RWDD3S4R434 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
TMEM56-RWDD3S4R434 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
TMEM56-RWDD3S4R434 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC21.38■■□□□ 1.01
TMEM56-RWDD3S4R434 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
TMEM56-RWDD3S4R434 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
TMEM56-RWDD3S4R434 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC21.37■■□□□ 1.01
TMEM56-RWDD3S4R434 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
TMEM56-RWDD3S4R434 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
TMEM56-RWDD3S4R434 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
TMEM56-RWDD3S4R434 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC21.36■■□□□ 1.01
TMEM56-RWDD3S4R434 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
TMEM56-RWDD3S4R434 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
TMEM56-RWDD3S4R434 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC21.35■■□□□ 1.01
TMEM56-RWDD3S4R434 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
TMEM56-RWDD3S4R434 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TMEM56-RWDD3S4R434 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
TMEM56-RWDD3S4R434 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC21.33■■□□□ 1.01
TMEM56-RWDD3S4R434 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
TMEM56-RWDD3S4R434 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1
TMEM56-RWDD3S4R434 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
TMEM56-RWDD3S4R434 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC21.32■■□□□ 1
TMEM56-RWDD3S4R434 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
TMEM56-RWDD3S4R434 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC21.32■■□□□ 1
TMEM56-RWDD3S4R434 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC21.32■■□□□ 1
TMEM56-RWDD3S4R434 CREM-210ENST00000374721 2020 ntTSL 5 BASIC21.32■■□□□ 1
TMEM56-RWDD3S4R434 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TMEM56-RWDD3S4R434 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
TMEM56-RWDD3S4R434 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
TMEM56-RWDD3S4R434 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TMEM56-RWDD3S4R434 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC21.31■■□□□ 1
TMEM56-RWDD3S4R434 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC21.31■■□□□ 1
TMEM56-RWDD3S4R434 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TMEM56-RWDD3S4R434 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
TMEM56-RWDD3S4R434 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC21.3■■□□□ 1
TMEM56-RWDD3S4R434 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC21.3■■□□□ 1
TMEM56-RWDD3S4R434 AC010864.1-201ENST00000609407 1511 ntBASIC21.29■■□□□ 1
TMEM56-RWDD3S4R434 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
TMEM56-RWDD3S4R434 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TMEM56-RWDD3S4R434 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC21.29■■□□□ 1
TMEM56-RWDD3S4R434 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
TMEM56-RWDD3S4R434 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
TMEM56-RWDD3S4R434 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
TMEM56-RWDD3S4R434 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC21.27■■□□□ 1
TMEM56-RWDD3S4R434 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TMEM56-RWDD3S4R434 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TMEM56-RWDD3S4R434 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
TMEM56-RWDD3S4R434 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC21.25■□□□□ 0.99
TMEM56-RWDD3S4R434 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC21.25■□□□□ 0.99
TMEM56-RWDD3S4R434 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
TMEM56-RWDD3S4R434 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
TMEM56-RWDD3S4R434 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TMEM56-RWDD3S4R434 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC21.24■□□□□ 0.99
TMEM56-RWDD3S4R434 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC21.24■□□□□ 0.99
TMEM56-RWDD3S4R434 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
TMEM56-RWDD3S4R434 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC21.24■□□□□ 0.99
TMEM56-RWDD3S4R434 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TMEM56-RWDD3S4R434 BX255925.1-201ENST00000566954 1854 ntBASIC21.23■□□□□ 0.99
TMEM56-RWDD3S4R434 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
TMEM56-RWDD3S4R434 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC21.23■□□□□ 0.99
TMEM56-RWDD3S4R434 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TMEM56-RWDD3S4R434 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TMEM56-RWDD3S4R434 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
TMEM56-RWDD3S4R434 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
TMEM56-RWDD3S4R434 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms