Protein–RNA interactions for Protein: Q9Y5I1

PCDHA11, Protocadherin alpha-11, humanhuman

Predictions only

Length 949 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA11Q9Y5I1 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC28.94■■■□□ 2.22
PCDHA11Q9Y5I1 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC28.93■■■□□ 2.22
PCDHA11Q9Y5I1 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC28.92■■■□□ 2.22
PCDHA11Q9Y5I1 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC28.91■■■□□ 2.22
PCDHA11Q9Y5I1 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC28.9■■■□□ 2.22
PCDHA11Q9Y5I1 RARRES2P2-201ENST00000394842 485 ntBASIC28.9■■■□□ 2.22
PCDHA11Q9Y5I1 HES6-205ENST00000409356 528 ntTSL 2 BASIC28.9■■■□□ 2.22
PCDHA11Q9Y5I1 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC28.9■■■□□ 2.22
PCDHA11Q9Y5I1 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC28.9■■■□□ 2.22
PCDHA11Q9Y5I1 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC28.89■■■□□ 2.22
PCDHA11Q9Y5I1 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC28.89■■■□□ 2.22
PCDHA11Q9Y5I1 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC28.87■■■□□ 2.21
PCDHA11Q9Y5I1 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
PCDHA11Q9Y5I1 ABHD17AP5-201ENST00000580133 923 ntBASIC28.86■■■□□ 2.21
PCDHA11Q9Y5I1 SRP68-213ENST00000629930 165 ntTSL 5 BASIC28.86■■■□□ 2.21
PCDHA11Q9Y5I1 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC28.86■■■□□ 2.21
PCDHA11Q9Y5I1 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
PCDHA11Q9Y5I1 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
PCDHA11Q9Y5I1 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
PCDHA11Q9Y5I1 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC28.85■■■□□ 2.21
PCDHA11Q9Y5I1 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
PCDHA11Q9Y5I1 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
PCDHA11Q9Y5I1 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC28.84■■■□□ 2.21
PCDHA11Q9Y5I1 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC28.84■■■□□ 2.21
PCDHA11Q9Y5I1 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
PCDHA11Q9Y5I1 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC28.83■■■□□ 2.21
PCDHA11Q9Y5I1 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC28.83■■■□□ 2.21
PCDHA11Q9Y5I1 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC28.83■■■□□ 2.21
PCDHA11Q9Y5I1 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC28.83■■■□□ 2.21
PCDHA11Q9Y5I1 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC28.83■■■□□ 2.21
PCDHA11Q9Y5I1 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC28.83■■■□□ 2.21
PCDHA11Q9Y5I1 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC28.83■■■□□ 2.21
PCDHA11Q9Y5I1 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC28.83■■■□□ 2.21
PCDHA11Q9Y5I1 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC28.83■■■□□ 2.21
PCDHA11Q9Y5I1 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC28.82■■■□□ 2.2
PCDHA11Q9Y5I1 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
PCDHA11Q9Y5I1 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
PCDHA11Q9Y5I1 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC28.8■■■□□ 2.2
PCDHA11Q9Y5I1 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC28.8■■■□□ 2.2
PCDHA11Q9Y5I1 CHML-204ENST00000638121 920 ntTSL 2 BASIC28.8■■■□□ 2.2
PCDHA11Q9Y5I1 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC28.77■■■□□ 2.2
PCDHA11Q9Y5I1 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC28.77■■■□□ 2.2
PCDHA11Q9Y5I1 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
PCDHA11Q9Y5I1 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
PCDHA11Q9Y5I1 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
PCDHA11Q9Y5I1 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
PCDHA11Q9Y5I1 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC28.74■■■□□ 2.19
PCDHA11Q9Y5I1 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC28.74■■■□□ 2.19
PCDHA11Q9Y5I1 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
PCDHA11Q9Y5I1 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC28.74■■■□□ 2.19
PCDHA11Q9Y5I1 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
PCDHA11Q9Y5I1 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC28.72■■■□□ 2.19
PCDHA11Q9Y5I1 EI24-212ENST00000615917 1407 ntTSL 2 BASIC28.72■■■□□ 2.19
PCDHA11Q9Y5I1 GPX1-201ENST00000419349 1106 ntBASIC28.72■■■□□ 2.19
PCDHA11Q9Y5I1 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
PCDHA11Q9Y5I1 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
PCDHA11Q9Y5I1 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC28.71■■■□□ 2.19
PCDHA11Q9Y5I1 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
PCDHA11Q9Y5I1 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
PCDHA11Q9Y5I1 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC28.7■■■□□ 2.19
PCDHA11Q9Y5I1 RNF126P1-201ENST00000567452 1320 ntBASIC28.7■■■□□ 2.19
PCDHA11Q9Y5I1 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
PCDHA11Q9Y5I1 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC28.7■■■□□ 2.18
PCDHA11Q9Y5I1 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC28.7■■■□□ 2.18
PCDHA11Q9Y5I1 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC28.7■■■□□ 2.18
PCDHA11Q9Y5I1 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC28.69■■■□□ 2.18
PCDHA11Q9Y5I1 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
PCDHA11Q9Y5I1 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
PCDHA11Q9Y5I1 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC28.68■■■□□ 2.18
PCDHA11Q9Y5I1 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
PCDHA11Q9Y5I1 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
PCDHA11Q9Y5I1 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
PCDHA11Q9Y5I1 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
PCDHA11Q9Y5I1 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC28.67■■■□□ 2.18
PCDHA11Q9Y5I1 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC28.67■■■□□ 2.18
PCDHA11Q9Y5I1 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
PCDHA11Q9Y5I1 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC28.66■■■□□ 2.18
PCDHA11Q9Y5I1 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC28.64■■■□□ 2.18
PCDHA11Q9Y5I1 TPT1-202ENST00000379055 948 ntTSL 2 BASIC28.64■■■□□ 2.18
PCDHA11Q9Y5I1 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.17
PCDHA11Q9Y5I1 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC28.63■■■□□ 2.17
PCDHA11Q9Y5I1 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
PCDHA11Q9Y5I1 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
PCDHA11Q9Y5I1 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
PCDHA11Q9Y5I1 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC28.61■■■□□ 2.17
PCDHA11Q9Y5I1 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC28.6■■■□□ 2.17
PCDHA11Q9Y5I1 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
PCDHA11Q9Y5I1 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC28.59■■■□□ 2.17
PCDHA11Q9Y5I1 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
PCDHA11Q9Y5I1 CHST11-202ENST00000546689 756 ntTSL 2 BASIC28.58■■■□□ 2.17
PCDHA11Q9Y5I1 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC28.58■■■□□ 2.17
PCDHA11Q9Y5I1 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC28.57■■■□□ 2.16
PCDHA11Q9Y5I1 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
PCDHA11Q9Y5I1 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC28.57■■■□□ 2.16
PCDHA11Q9Y5I1 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
PCDHA11Q9Y5I1 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC28.56■■■□□ 2.16
PCDHA11Q9Y5I1 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC28.56■■■□□ 2.16
PCDHA11Q9Y5I1 ST7-205ENST00000393446 2114 ntTSL 5 BASIC28.54■■■□□ 2.16
PCDHA11Q9Y5I1 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
PCDHA11Q9Y5I1 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC28.53■■■□□ 2.16
Retrieved 100 of 98,524 protein–RNA pairs in 11 ms