Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC33.95■■■■□ 3.02
USP42Q9H9J4 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC33.93■■■■□ 3.02
USP42Q9H9J4 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC33.93■■■■□ 3.02
USP42Q9H9J4 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC33.92■■■■□ 3.02
USP42Q9H9J4 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC33.91■■■■□ 3.02
USP42Q9H9J4 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC33.91■■■■□ 3.02
USP42Q9H9J4 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC33.91■■■■□ 3.02
USP42Q9H9J4 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC33.9■■■■□ 3.02
USP42Q9H9J4 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC33.9■■■■□ 3.02
USP42Q9H9J4 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC33.9■■■■□ 3.02
USP42Q9H9J4 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC33.9■■■■□ 3.02
USP42Q9H9J4 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC33.9■■■■□ 3.02
USP42Q9H9J4 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC33.9■■■■□ 3.02
USP42Q9H9J4 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC33.9■■■■□ 3.02
USP42Q9H9J4 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC33.89■■■■□ 3.02
USP42Q9H9J4 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC33.89■■■■□ 3.02
USP42Q9H9J4 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC33.87■■■■□ 3.01
USP42Q9H9J4 DUX4L13-201ENST00000554103 1267 ntBASIC33.86■■■■□ 3.01
USP42Q9H9J4 DUX4L15-201ENST00000611059 1267 ntBASIC33.86■■■■□ 3.01
USP42Q9H9J4 DUX4L23-201ENST00000615195 1269 ntBASIC33.86■■■■□ 3.01
USP42Q9H9J4 DUX4L24-201ENST00000617576 1269 ntBASIC33.86■■■■□ 3.01
USP42Q9H9J4 DUX4L22-201ENST00000618238 1269 ntBASIC33.86■■■■□ 3.01
USP42Q9H9J4 DUX4L20-201ENST00000619712 1269 ntBASIC33.86■■■■□ 3.01
USP42Q9H9J4 DUX4L21-201ENST00000622058 1269 ntBASIC33.86■■■■□ 3.01
USP42Q9H9J4 DUX4L10-201ENST00000622460 1267 ntBASIC33.86■■■■□ 3.01
USP42Q9H9J4 DUX4L25-201ENST00000624915 1269 ntBASIC33.86■■■■□ 3.01
USP42Q9H9J4 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC33.85■■■■□ 3.01
USP42Q9H9J4 METRNL-202ENST00000570778 967 ntTSL 5 BASIC33.85■■■■□ 3.01
USP42Q9H9J4 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC33.85■■■■□ 3.01
USP42Q9H9J4 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC33.85■■■■□ 3.01
USP42Q9H9J4 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC33.84■■■■□ 3.01
USP42Q9H9J4 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC33.84■■■■□ 3.01
USP42Q9H9J4 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC33.83■■■■□ 3.01
USP42Q9H9J4 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC33.83■■■■□ 3.01
USP42Q9H9J4 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC33.83■■■■□ 3.01
USP42Q9H9J4 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC33.82■■■■□ 3.01
USP42Q9H9J4 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC33.81■■■■□ 3
USP42Q9H9J4 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC33.8■■■■□ 3
USP42Q9H9J4 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC33.8■■■■□ 3
USP42Q9H9J4 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC33.79■■■■□ 3
USP42Q9H9J4 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC33.79■■■■□ 3
USP42Q9H9J4 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC33.76■■■■□ 3
USP42Q9H9J4 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC33.76■■■□□ 2.99
USP42Q9H9J4 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC33.75■■■□□ 2.99
USP42Q9H9J4 HES6-205ENST00000409356 528 ntTSL 2 BASIC33.75■■■□□ 2.99
USP42Q9H9J4 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC33.74■■■□□ 2.99
USP42Q9H9J4 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC33.73■■■□□ 2.99
USP42Q9H9J4 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC33.72■■■□□ 2.99
USP42Q9H9J4 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC33.72■■■□□ 2.99
USP42Q9H9J4 AC120057.4-201ENST00000624722 1615 ntBASIC33.71■■■□□ 2.99
USP42Q9H9J4 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC33.71■■■□□ 2.99
USP42Q9H9J4 EI24-212ENST00000615917 1407 ntTSL 2 BASIC33.71■■■□□ 2.99
USP42Q9H9J4 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC33.71■■■□□ 2.99
USP42Q9H9J4 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC33.7■■■□□ 2.99
USP42Q9H9J4 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC33.69■■■□□ 2.98
USP42Q9H9J4 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC33.69■■■□□ 2.98
USP42Q9H9J4 CHML-204ENST00000638121 920 ntTSL 2 BASIC33.69■■■□□ 2.98
USP42Q9H9J4 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC33.69■■■□□ 2.98
USP42Q9H9J4 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC33.69■■■□□ 2.98
USP42Q9H9J4 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC33.68■■■□□ 2.98
USP42Q9H9J4 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC33.68■■■□□ 2.98
USP42Q9H9J4 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC33.68■■■□□ 2.98
USP42Q9H9J4 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC33.67■■■□□ 2.98
USP42Q9H9J4 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC33.67■■■□□ 2.98
USP42Q9H9J4 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC33.67■■■□□ 2.98
USP42Q9H9J4 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC33.67■■■□□ 2.98
USP42Q9H9J4 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC33.65■■■□□ 2.98
USP42Q9H9J4 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC33.65■■■□□ 2.98
USP42Q9H9J4 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC33.65■■■□□ 2.98
USP42Q9H9J4 SRP68-213ENST00000629930 165 ntTSL 5 BASIC33.65■■■□□ 2.98
USP42Q9H9J4 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC33.64■■■□□ 2.98
USP42Q9H9J4 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC33.64■■■□□ 2.98
USP42Q9H9J4 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC33.63■■■□□ 2.97
USP42Q9H9J4 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC33.62■■■□□ 2.97
USP42Q9H9J4 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC33.62■■■□□ 2.97
USP42Q9H9J4 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC33.62■■■□□ 2.97
USP42Q9H9J4 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC33.62■■■□□ 2.97
USP42Q9H9J4 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC33.62■■■□□ 2.97
USP42Q9H9J4 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC33.61■■■□□ 2.97
USP42Q9H9J4 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC33.61■■■□□ 2.97
USP42Q9H9J4 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC33.6■■■□□ 2.97
USP42Q9H9J4 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC33.6■■■□□ 2.97
USP42Q9H9J4 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC33.58■■■□□ 2.97
USP42Q9H9J4 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC33.58■■■□□ 2.97
USP42Q9H9J4 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC33.57■■■□□ 2.97
USP42Q9H9J4 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC33.57■■■□□ 2.97
USP42Q9H9J4 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC33.57■■■□□ 2.97
USP42Q9H9J4 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC33.57■■■□□ 2.97
USP42Q9H9J4 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC33.57■■■□□ 2.97
USP42Q9H9J4 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC33.57■■■□□ 2.97
USP42Q9H9J4 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC33.57■■■□□ 2.97
USP42Q9H9J4 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC33.57■■■□□ 2.97
USP42Q9H9J4 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC33.57■■■□□ 2.96
USP42Q9H9J4 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC33.57■■■□□ 2.96
USP42Q9H9J4 RARRES2P2-201ENST00000394842 485 ntBASIC33.56■■■□□ 2.96
USP42Q9H9J4 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC33.55■■■□□ 2.96
USP42Q9H9J4 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC33.55■■■□□ 2.96
USP42Q9H9J4 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC33.55■■■□□ 2.96
USP42Q9H9J4 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC33.53■■■□□ 2.96
USP42Q9H9J4 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC33.53■■■□□ 2.96
Retrieved 100 of 98,524 protein–RNA pairs in 13.5 ms