Protein–RNA interactions for Protein: Q9BRR0

ZKSCAN3, Zinc finger protein with KRAB and SCAN domains 3, humanhuman

Predictions only

Length 538 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZKSCAN3Q9BRR0 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC31.08■■■□□ 2.57
ZKSCAN3Q9BRR0 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
ZKSCAN3Q9BRR0 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
ZKSCAN3Q9BRR0 AC010864.1-201ENST00000609407 1511 ntBASIC31.07■■■□□ 2.56
ZKSCAN3Q9BRR0 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC31.07■■■□□ 2.56
ZKSCAN3Q9BRR0 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC31.06■■■□□ 2.56
ZKSCAN3Q9BRR0 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
ZKSCAN3Q9BRR0 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC31.06■■■□□ 2.56
ZKSCAN3Q9BRR0 MIR6090-201ENST00000622481 60 ntBASIC31.06■■■□□ 2.56
ZKSCAN3Q9BRR0 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC31.05■■■□□ 2.56
ZKSCAN3Q9BRR0 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
ZKSCAN3Q9BRR0 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
ZKSCAN3Q9BRR0 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
ZKSCAN3Q9BRR0 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
ZKSCAN3Q9BRR0 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC31.02■■■□□ 2.56
ZKSCAN3Q9BRR0 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.56
ZKSCAN3Q9BRR0 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC31.01■■■□□ 2.55
ZKSCAN3Q9BRR0 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC31.01■■■□□ 2.55
ZKSCAN3Q9BRR0 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC31.01■■■□□ 2.55
ZKSCAN3Q9BRR0 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC31■■■□□ 2.55
ZKSCAN3Q9BRR0 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC31■■■□□ 2.55
ZKSCAN3Q9BRR0 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC30.98■■■□□ 2.55
ZKSCAN3Q9BRR0 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC30.98■■■□□ 2.55
ZKSCAN3Q9BRR0 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
ZKSCAN3Q9BRR0 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
ZKSCAN3Q9BRR0 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC30.97■■■□□ 2.55
ZKSCAN3Q9BRR0 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
ZKSCAN3Q9BRR0 BOD1-206ENST00000480951 814 ntTSL 2 BASIC30.97■■■□□ 2.55
ZKSCAN3Q9BRR0 AC108673.1-201ENST00000510422 1159 ntBASIC30.97■■■□□ 2.55
ZKSCAN3Q9BRR0 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
ZKSCAN3Q9BRR0 ABCB10P1-201ENST00000614297 2181 ntBASIC30.96■■■□□ 2.55
ZKSCAN3Q9BRR0 ST7-AS1-201ENST00000456775 1889 ntBASIC30.95■■■□□ 2.55
ZKSCAN3Q9BRR0 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC30.95■■■□□ 2.55
ZKSCAN3Q9BRR0 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC30.95■■■□□ 2.54
ZKSCAN3Q9BRR0 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC30.95■■■□□ 2.54
ZKSCAN3Q9BRR0 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC30.94■■■□□ 2.54
ZKSCAN3Q9BRR0 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
ZKSCAN3Q9BRR0 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC30.92■■■□□ 2.54
ZKSCAN3Q9BRR0 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC30.92■■■□□ 2.54
ZKSCAN3Q9BRR0 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC30.91■■■□□ 2.54
ZKSCAN3Q9BRR0 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
ZKSCAN3Q9BRR0 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC30.9■■■□□ 2.54
ZKSCAN3Q9BRR0 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
ZKSCAN3Q9BRR0 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
ZKSCAN3Q9BRR0 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC30.88■■■□□ 2.53
ZKSCAN3Q9BRR0 CIB2-204ENST00000557846 934 ntTSL 3 BASIC30.88■■■□□ 2.53
ZKSCAN3Q9BRR0 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC30.87■■■□□ 2.53
ZKSCAN3Q9BRR0 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
ZKSCAN3Q9BRR0 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
ZKSCAN3Q9BRR0 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC30.85■■■□□ 2.53
ZKSCAN3Q9BRR0 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC30.85■■■□□ 2.53
ZKSCAN3Q9BRR0 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC30.85■■■□□ 2.53
ZKSCAN3Q9BRR0 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC30.84■■■□□ 2.53
ZKSCAN3Q9BRR0 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
ZKSCAN3Q9BRR0 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC30.83■■■□□ 2.53
ZKSCAN3Q9BRR0 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC30.83■■■□□ 2.53
ZKSCAN3Q9BRR0 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC30.83■■■□□ 2.53
ZKSCAN3Q9BRR0 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC30.83■■■□□ 2.53
ZKSCAN3Q9BRR0 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.53
ZKSCAN3Q9BRR0 AC021231.2-201ENST00000594613 730 ntBASIC30.8■■■□□ 2.52
ZKSCAN3Q9BRR0 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
ZKSCAN3Q9BRR0 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC30.79■■■□□ 2.52
ZKSCAN3Q9BRR0 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
ZKSCAN3Q9BRR0 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC30.78■■■□□ 2.52
ZKSCAN3Q9BRR0 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
ZKSCAN3Q9BRR0 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC30.78■■■□□ 2.52
ZKSCAN3Q9BRR0 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC30.77■■■□□ 2.52
ZKSCAN3Q9BRR0 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC30.77■■■□□ 2.52
ZKSCAN3Q9BRR0 DUX4L29-201ENST00000425409 679 ntBASIC30.77■■■□□ 2.52
ZKSCAN3Q9BRR0 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC30.77■■■□□ 2.52
ZKSCAN3Q9BRR0 HGH1-207ENST00000628266 258 ntTSL 5 BASIC30.77■■■□□ 2.52
ZKSCAN3Q9BRR0 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC30.76■■■□□ 2.52
ZKSCAN3Q9BRR0 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC30.76■■■□□ 2.51
ZKSCAN3Q9BRR0 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC30.76■■■□□ 2.51
ZKSCAN3Q9BRR0 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
ZKSCAN3Q9BRR0 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC30.75■■■□□ 2.51
ZKSCAN3Q9BRR0 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC30.75■■■□□ 2.51
ZKSCAN3Q9BRR0 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
ZKSCAN3Q9BRR0 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
ZKSCAN3Q9BRR0 ABHD17AP4-201ENST00000411545 909 ntBASIC30.74■■■□□ 2.51
ZKSCAN3Q9BRR0 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
ZKSCAN3Q9BRR0 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
ZKSCAN3Q9BRR0 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC30.73■■■□□ 2.51
ZKSCAN3Q9BRR0 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC30.72■■■□□ 2.51
ZKSCAN3Q9BRR0 MLEC-202ENST00000412616 841 ntTSL 3 BASIC30.72■■■□□ 2.51
ZKSCAN3Q9BRR0 AC127502.1-201ENST00000399971 1502 ntBASIC30.72■■■□□ 2.51
ZKSCAN3Q9BRR0 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC30.72■■■□□ 2.51
ZKSCAN3Q9BRR0 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC30.71■■■□□ 2.51
ZKSCAN3Q9BRR0 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
ZKSCAN3Q9BRR0 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC30.71■■■□□ 2.51
ZKSCAN3Q9BRR0 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
ZKSCAN3Q9BRR0 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC30.7■■■□□ 2.51
ZKSCAN3Q9BRR0 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC30.69■■■□□ 2.5
ZKSCAN3Q9BRR0 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
ZKSCAN3Q9BRR0 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
ZKSCAN3Q9BRR0 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC30.66■■■□□ 2.5
ZKSCAN3Q9BRR0 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
ZKSCAN3Q9BRR0 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
ZKSCAN3Q9BRR0 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC30.66■■■□□ 2.5
ZKSCAN3Q9BRR0 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
Retrieved 100 of 98,524 protein–RNA pairs in 9.6 ms