Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 HES6-205ENST00000409356 528 ntTSL 2 BASIC27.48■■□□□ 1.99
SLC44A3Q8N4M1 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC27.47■■□□□ 1.99
SLC44A3Q8N4M1 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC27.47■■□□□ 1.99
SLC44A3Q8N4M1 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC27.46■■□□□ 1.99
SLC44A3Q8N4M1 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC27.46■■□□□ 1.99
SLC44A3Q8N4M1 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC27.46■■□□□ 1.99
SLC44A3Q8N4M1 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC27.46■■□□□ 1.99
SLC44A3Q8N4M1 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
SLC44A3Q8N4M1 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC27.45■■□□□ 1.99
SLC44A3Q8N4M1 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC27.45■■□□□ 1.99
SLC44A3Q8N4M1 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
SLC44A3Q8N4M1 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC27.43■■□□□ 1.98
SLC44A3Q8N4M1 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC27.43■■□□□ 1.98
SLC44A3Q8N4M1 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
SLC44A3Q8N4M1 CHML-204ENST00000638121 920 ntTSL 2 BASIC27.41■■□□□ 1.98
SLC44A3Q8N4M1 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC27.4■■□□□ 1.98
SLC44A3Q8N4M1 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC27.4■■□□□ 1.98
SLC44A3Q8N4M1 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC27.4■■□□□ 1.98
SLC44A3Q8N4M1 EI24-212ENST00000615917 1407 ntTSL 2 BASIC27.39■■□□□ 1.97
SLC44A3Q8N4M1 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC27.39■■□□□ 1.97
SLC44A3Q8N4M1 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC27.38■■□□□ 1.97
SLC44A3Q8N4M1 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC27.38■■□□□ 1.97
SLC44A3Q8N4M1 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC27.38■■□□□ 1.97
SLC44A3Q8N4M1 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC27.37■■□□□ 1.97
SLC44A3Q8N4M1 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC27.36■■□□□ 1.97
SLC44A3Q8N4M1 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
SLC44A3Q8N4M1 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
SLC44A3Q8N4M1 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
SLC44A3Q8N4M1 SRP68-213ENST00000629930 165 ntTSL 5 BASIC27.35■■□□□ 1.97
SLC44A3Q8N4M1 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC27.34■■□□□ 1.97
SLC44A3Q8N4M1 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
SLC44A3Q8N4M1 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
SLC44A3Q8N4M1 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
SLC44A3Q8N4M1 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
SLC44A3Q8N4M1 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
SLC44A3Q8N4M1 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC27.33■■□□□ 1.97
SLC44A3Q8N4M1 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC27.33■■□□□ 1.97
SLC44A3Q8N4M1 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC27.33■■□□□ 1.97
SLC44A3Q8N4M1 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC27.32■■□□□ 1.96
SLC44A3Q8N4M1 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC27.32■■□□□ 1.96
SLC44A3Q8N4M1 RARRES2P2-201ENST00000394842 485 ntBASIC27.31■■□□□ 1.96
SLC44A3Q8N4M1 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
SLC44A3Q8N4M1 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
SLC44A3Q8N4M1 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
SLC44A3Q8N4M1 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
SLC44A3Q8N4M1 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC27.29■■□□□ 1.96
SLC44A3Q8N4M1 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
SLC44A3Q8N4M1 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC27.27■■□□□ 1.96
SLC44A3Q8N4M1 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC27.27■■□□□ 1.96
SLC44A3Q8N4M1 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
SLC44A3Q8N4M1 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
SLC44A3Q8N4M1 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC27.27■■□□□ 1.96
SLC44A3Q8N4M1 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC27.26■■□□□ 1.95
SLC44A3Q8N4M1 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
SLC44A3Q8N4M1 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
SLC44A3Q8N4M1 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC27.25■■□□□ 1.95
SLC44A3Q8N4M1 ABHD17AP5-201ENST00000580133 923 ntBASIC27.24■■□□□ 1.95
SLC44A3Q8N4M1 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
SLC44A3Q8N4M1 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
SLC44A3Q8N4M1 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
SLC44A3Q8N4M1 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
SLC44A3Q8N4M1 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC27.23■■□□□ 1.95
SLC44A3Q8N4M1 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
SLC44A3Q8N4M1 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
SLC44A3Q8N4M1 GPX1-201ENST00000419349 1106 ntBASIC27.22■■□□□ 1.95
SLC44A3Q8N4M1 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
SLC44A3Q8N4M1 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC27.22■■□□□ 1.95
SLC44A3Q8N4M1 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC27.21■■□□□ 1.95
SLC44A3Q8N4M1 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
SLC44A3Q8N4M1 CHST11-202ENST00000546689 756 ntTSL 2 BASIC27.21■■□□□ 1.95
SLC44A3Q8N4M1 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
SLC44A3Q8N4M1 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
SLC44A3Q8N4M1 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC27.18■■□□□ 1.94
SLC44A3Q8N4M1 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC27.17■■□□□ 1.94
SLC44A3Q8N4M1 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
SLC44A3Q8N4M1 TPT1-202ENST00000379055 948 ntTSL 2 BASIC27.17■■□□□ 1.94
SLC44A3Q8N4M1 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
SLC44A3Q8N4M1 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC27.17■■□□□ 1.94
SLC44A3Q8N4M1 RNF126P1-201ENST00000567452 1320 ntBASIC27.16■■□□□ 1.94
SLC44A3Q8N4M1 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC27.16■■□□□ 1.94
SLC44A3Q8N4M1 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
SLC44A3Q8N4M1 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC27.16■■□□□ 1.94
SLC44A3Q8N4M1 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC27.15■■□□□ 1.94
SLC44A3Q8N4M1 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
SLC44A3Q8N4M1 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC27.14■■□□□ 1.94
SLC44A3Q8N4M1 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC27.14■■□□□ 1.94
SLC44A3Q8N4M1 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
SLC44A3Q8N4M1 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.93
SLC44A3Q8N4M1 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC27.13■■□□□ 1.93
SLC44A3Q8N4M1 AC120057.4-201ENST00000624722 1615 ntBASIC27.12■■□□□ 1.93
SLC44A3Q8N4M1 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC27.12■■□□□ 1.93
SLC44A3Q8N4M1 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
SLC44A3Q8N4M1 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC27.12■■□□□ 1.93
SLC44A3Q8N4M1 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC27.12■■□□□ 1.93
SLC44A3Q8N4M1 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC27.12■■□□□ 1.93
SLC44A3Q8N4M1 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
SLC44A3Q8N4M1 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC27.11■■□□□ 1.93
SLC44A3Q8N4M1 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
SLC44A3Q8N4M1 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC27.1■■□□□ 1.93
SLC44A3Q8N4M1 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC27.1■■□□□ 1.93
Retrieved 100 of 98,524 protein–RNA pairs in 13.5 ms