Protein–RNA interactions for Protein: Q6ZW05

PTCHD4, Patched domain-containing protein 4, humanhuman

Predictions only

Length 846 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4Q6ZW05 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
PTCHD4Q6ZW05 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
PTCHD4Q6ZW05 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
PTCHD4Q6ZW05 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
PTCHD4Q6ZW05 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC24.02■■□□□ 1.44
PTCHD4Q6ZW05 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
PTCHD4Q6ZW05 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
PTCHD4Q6ZW05 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
PTCHD4Q6ZW05 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
PTCHD4Q6ZW05 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
PTCHD4Q6ZW05 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
PTCHD4Q6ZW05 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC23.97■■□□□ 1.43
PTCHD4Q6ZW05 KLF16-203ENST00000592313 508 ntTSL 3 BASIC23.97■■□□□ 1.43
PTCHD4Q6ZW05 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
PTCHD4Q6ZW05 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC23.96■■□□□ 1.43
PTCHD4Q6ZW05 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC23.96■■□□□ 1.43
PTCHD4Q6ZW05 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC23.96■■□□□ 1.43
PTCHD4Q6ZW05 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
PTCHD4Q6ZW05 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
PTCHD4Q6ZW05 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC23.95■■□□□ 1.42
PTCHD4Q6ZW05 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC23.95■■□□□ 1.42
PTCHD4Q6ZW05 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
PTCHD4Q6ZW05 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC23.93■■□□□ 1.42
PTCHD4Q6ZW05 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
PTCHD4Q6ZW05 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
PTCHD4Q6ZW05 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
PTCHD4Q6ZW05 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC23.92■■□□□ 1.42
PTCHD4Q6ZW05 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC23.92■■□□□ 1.42
PTCHD4Q6ZW05 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC23.91■■□□□ 1.42
PTCHD4Q6ZW05 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
PTCHD4Q6ZW05 AL139393.2-201ENST00000608721 2025 ntBASIC23.91■■□□□ 1.42
PTCHD4Q6ZW05 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC23.9■■□□□ 1.42
PTCHD4Q6ZW05 AL133380.1-201ENST00000506013 324 ntBASIC23.9■■□□□ 1.42
PTCHD4Q6ZW05 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC23.9■■□□□ 1.42
PTCHD4Q6ZW05 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
PTCHD4Q6ZW05 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC23.89■■□□□ 1.41
PTCHD4Q6ZW05 WASH5P-204ENST00000632292 975 ntBASIC23.88■■□□□ 1.41
PTCHD4Q6ZW05 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
PTCHD4Q6ZW05 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC23.86■■□□□ 1.41
PTCHD4Q6ZW05 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC23.86■■□□□ 1.41
PTCHD4Q6ZW05 DRD5P2-201ENST00000421395 2012 ntBASIC23.85■■□□□ 1.41
PTCHD4Q6ZW05 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
PTCHD4Q6ZW05 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
PTCHD4Q6ZW05 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
PTCHD4Q6ZW05 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC23.81■■□□□ 1.4
PTCHD4Q6ZW05 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
PTCHD4Q6ZW05 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC23.8■■□□□ 1.4
PTCHD4Q6ZW05 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
PTCHD4Q6ZW05 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
PTCHD4Q6ZW05 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
PTCHD4Q6ZW05 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
PTCHD4Q6ZW05 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
PTCHD4Q6ZW05 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC23.78■■□□□ 1.4
PTCHD4Q6ZW05 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC23.78■■□□□ 1.4
PTCHD4Q6ZW05 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
PTCHD4Q6ZW05 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
PTCHD4Q6ZW05 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC23.77■■□□□ 1.4
PTCHD4Q6ZW05 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
PTCHD4Q6ZW05 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
PTCHD4Q6ZW05 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC23.76■■□□□ 1.39
PTCHD4Q6ZW05 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
PTCHD4Q6ZW05 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC23.75■■□□□ 1.39
PTCHD4Q6ZW05 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
PTCHD4Q6ZW05 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
PTCHD4Q6ZW05 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
PTCHD4Q6ZW05 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC23.75■■□□□ 1.39
PTCHD4Q6ZW05 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC23.75■■□□□ 1.39
PTCHD4Q6ZW05 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
PTCHD4Q6ZW05 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
PTCHD4Q6ZW05 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
PTCHD4Q6ZW05 AL121749.1-202ENST00000609313 2153 ntBASIC23.74■■□□□ 1.39
PTCHD4Q6ZW05 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC23.74■■□□□ 1.39
PTCHD4Q6ZW05 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
PTCHD4Q6ZW05 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
PTCHD4Q6ZW05 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
PTCHD4Q6ZW05 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
PTCHD4Q6ZW05 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC23.72■■□□□ 1.39
PTCHD4Q6ZW05 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
PTCHD4Q6ZW05 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC23.71■■□□□ 1.39
PTCHD4Q6ZW05 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC23.71■■□□□ 1.39
PTCHD4Q6ZW05 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC23.71■■□□□ 1.39
PTCHD4Q6ZW05 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
PTCHD4Q6ZW05 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
PTCHD4Q6ZW05 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
PTCHD4Q6ZW05 RARRES2P7-201ENST00000567349 469 ntBASIC23.7■■□□□ 1.38
PTCHD4Q6ZW05 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.38
PTCHD4Q6ZW05 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
PTCHD4Q6ZW05 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
PTCHD4Q6ZW05 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
PTCHD4Q6ZW05 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
PTCHD4Q6ZW05 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC23.69■■□□□ 1.38
PTCHD4Q6ZW05 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
PTCHD4Q6ZW05 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
PTCHD4Q6ZW05 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
PTCHD4Q6ZW05 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC23.67■■□□□ 1.38
PTCHD4Q6ZW05 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC23.67■■□□□ 1.38
PTCHD4Q6ZW05 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
PTCHD4Q6ZW05 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
PTCHD4Q6ZW05 SETD8P1-201ENST00000623146 1180 ntBASIC23.66■■□□□ 1.38
PTCHD4Q6ZW05 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms