Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
KRT40Q6A162 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC30.53■■■□□ 2.48
KRT40Q6A162 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC30.52■■■□□ 2.48
KRT40Q6A162 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
KRT40Q6A162 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
KRT40Q6A162 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
KRT40Q6A162 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
KRT40Q6A162 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC30.49■■■□□ 2.47
KRT40Q6A162 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC30.49■■■□□ 2.47
KRT40Q6A162 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
KRT40Q6A162 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
KRT40Q6A162 ABHD17AP4-201ENST00000411545 909 ntBASIC30.48■■■□□ 2.47
KRT40Q6A162 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC30.48■■■□□ 2.47
KRT40Q6A162 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC30.47■■■□□ 2.47
KRT40Q6A162 PVT1-219ENST00000523427 938 ntTSL 3 BASIC30.47■■■□□ 2.47
KRT40Q6A162 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC30.47■■■□□ 2.47
KRT40Q6A162 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC30.46■■■□□ 2.47
KRT40Q6A162 AC139426.1-201ENST00000568218 2529 ntBASIC30.44■■■□□ 2.46
KRT40Q6A162 AC010864.1-201ENST00000609407 1511 ntBASIC30.44■■■□□ 2.46
KRT40Q6A162 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
KRT40Q6A162 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC30.43■■■□□ 2.46
KRT40Q6A162 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC30.42■■■□□ 2.46
KRT40Q6A162 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
KRT40Q6A162 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
KRT40Q6A162 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC30.41■■■□□ 2.46
KRT40Q6A162 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC30.41■■■□□ 2.46
KRT40Q6A162 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
KRT40Q6A162 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC30.39■■■□□ 2.46
KRT40Q6A162 MIR762-201ENST00000390236 83 ntBASIC30.39■■■□□ 2.46
KRT40Q6A162 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC30.39■■■□□ 2.45
KRT40Q6A162 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
KRT40Q6A162 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC30.38■■■□□ 2.45
KRT40Q6A162 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
KRT40Q6A162 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC30.37■■■□□ 2.45
KRT40Q6A162 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC30.37■■■□□ 2.45
KRT40Q6A162 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
KRT40Q6A162 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC30.36■■■□□ 2.45
KRT40Q6A162 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
KRT40Q6A162 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
KRT40Q6A162 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
KRT40Q6A162 HNRNPLP2-201ENST00000568980 1570 ntBASIC30.36■■■□□ 2.45
KRT40Q6A162 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC30.35■■■□□ 2.45
KRT40Q6A162 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
KRT40Q6A162 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC30.34■■■□□ 2.45
KRT40Q6A162 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
KRT40Q6A162 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC30.34■■■□□ 2.45
KRT40Q6A162 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
KRT40Q6A162 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
KRT40Q6A162 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC30.32■■■□□ 2.44
KRT40Q6A162 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
KRT40Q6A162 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
KRT40Q6A162 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
KRT40Q6A162 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC30.32■■■□□ 2.44
KRT40Q6A162 CHML-205ENST00000638160 705 ntTSL 3 BASIC30.32■■■□□ 2.44
KRT40Q6A162 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC30.32■■■□□ 2.44
KRT40Q6A162 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
KRT40Q6A162 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC30.31■■■□□ 2.44
KRT40Q6A162 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC30.31■■■□□ 2.44
KRT40Q6A162 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC30.31■■■□□ 2.44
KRT40Q6A162 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
KRT40Q6A162 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
KRT40Q6A162 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
KRT40Q6A162 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC30.3■■■□□ 2.44
KRT40Q6A162 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC30.3■■■□□ 2.44
KRT40Q6A162 MBP-237ENST00000579129 1052 ntTSL 5 BASIC30.3■■■□□ 2.44
KRT40Q6A162 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
KRT40Q6A162 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC30.28■■■□□ 2.44
KRT40Q6A162 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
KRT40Q6A162 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC30.28■■■□□ 2.44
KRT40Q6A162 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC30.28■■■□□ 2.44
KRT40Q6A162 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC30.28■■■□□ 2.44
KRT40Q6A162 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
KRT40Q6A162 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC30.26■■■□□ 2.43
KRT40Q6A162 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC30.26■■■□□ 2.43
KRT40Q6A162 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC30.25■■■□□ 2.43
KRT40Q6A162 HLA-V-202ENST00000446817 847 ntBASIC30.25■■■□□ 2.43
KRT40Q6A162 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
KRT40Q6A162 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC30.25■■■□□ 2.43
KRT40Q6A162 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
KRT40Q6A162 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC30.24■■■□□ 2.43
KRT40Q6A162 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
KRT40Q6A162 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
KRT40Q6A162 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
KRT40Q6A162 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC30.24■■■□□ 2.43
KRT40Q6A162 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC30.24■■■□□ 2.43
KRT40Q6A162 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC30.23■■■□□ 2.43
KRT40Q6A162 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
KRT40Q6A162 MIR3665-201ENST00000578708 105 ntBASIC30.21■■■□□ 2.43
KRT40Q6A162 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
KRT40Q6A162 SHF-206ENST00000560471 2499 ntTSL 5 BASIC30.2■■■□□ 2.43
KRT40Q6A162 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC30.2■■■□□ 2.43
KRT40Q6A162 AC087741.3-201ENST00000624270 1347 ntBASIC30.2■■■□□ 2.42
KRT40Q6A162 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC30.19■■■□□ 2.42
KRT40Q6A162 MLEC-202ENST00000412616 841 ntTSL 3 BASIC30.19■■■□□ 2.42
KRT40Q6A162 AC005559.1-201ENST00000589661 871 ntBASIC30.19■■■□□ 2.42
KRT40Q6A162 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC30.19■■■□□ 2.42
KRT40Q6A162 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC30.19■■■□□ 2.42
KRT40Q6A162 AL139393.2-201ENST00000608721 2025 ntBASIC30.17■■■□□ 2.42
KRT40Q6A162 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC30.17■■■□□ 2.42
KRT40Q6A162 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms