Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HSPG2P98160 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
HSPG2P98160 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
HSPG2P98160 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC16.95■□□□□ 0.3
HSPG2P98160 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HSPG2P98160 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC16.95■□□□□ 0.3
HSPG2P98160 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC16.95■□□□□ 0.3
HSPG2P98160 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC16.94■□□□□ 0.3
HSPG2P98160 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
HSPG2P98160 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HSPG2P98160 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HSPG2P98160 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC16.92■□□□□ 0.3
HSPG2P98160 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HSPG2P98160 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HSPG2P98160 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC16.91■□□□□ 0.3
HSPG2P98160 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
HSPG2P98160 AC008813.1-201ENST00000536597 885 ntBASIC16.89■□□□□ 0.3
HSPG2P98160 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HSPG2P98160 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC16.89■□□□□ 0.29
HSPG2P98160 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HSPG2P98160 AL592295.1-201ENST00000400984 884 ntBASIC16.89■□□□□ 0.29
HSPG2P98160 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC16.89■□□□□ 0.29
HSPG2P98160 CHML-204ENST00000638121 920 ntTSL 2 BASIC16.89■□□□□ 0.29
HSPG2P98160 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
HSPG2P98160 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HSPG2P98160 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HSPG2P98160 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HSPG2P98160 AL033527.3-201ENST00000566366 1196 ntBASIC16.87■□□□□ 0.29
HSPG2P98160 AL035685.1-201ENST00000636663 812 ntBASIC16.87■□□□□ 0.29
HSPG2P98160 CEP120-209ENST00000515110 606 ntTSL 3 BASIC16.87■□□□□ 0.29
HSPG2P98160 AC012354.3-201ENST00000623734 483 ntBASIC16.87■□□□□ 0.29
HSPG2P98160 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HSPG2P98160 GFER-205ENST00000569451 517 ntTSL 5 BASIC16.86■□□□□ 0.29
HSPG2P98160 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HSPG2P98160 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
HSPG2P98160 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HSPG2P98160 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HSPG2P98160 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC16.84■□□□□ 0.29
HSPG2P98160 RARRES2P1-201ENST00000474487 481 ntBASIC16.84■□□□□ 0.29
HSPG2P98160 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
HSPG2P98160 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
HSPG2P98160 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC16.84■□□□□ 0.29
HSPG2P98160 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HSPG2P98160 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
HSPG2P98160 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
HSPG2P98160 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HSPG2P98160 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HSPG2P98160 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
HSPG2P98160 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
HSPG2P98160 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HSPG2P98160 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
HSPG2P98160 TPT1-202ENST00000379055 948 ntTSL 2 BASIC16.82■□□□□ 0.28
HSPG2P98160 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HSPG2P98160 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HSPG2P98160 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC16.81■□□□□ 0.28
HSPG2P98160 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC16.81■□□□□ 0.28
HSPG2P98160 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
HSPG2P98160 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC16.8■□□□□ 0.28
HSPG2P98160 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC16.8■□□□□ 0.28
HSPG2P98160 MTURN-203ENST00000409688 843 ntTSL 2 BASIC16.8■□□□□ 0.28
HSPG2P98160 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HSPG2P98160 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
HSPG2P98160 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HSPG2P98160 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
HSPG2P98160 AC019069.1-201ENST00000610008 1333 ntBASIC16.78■□□□□ 0.28
HSPG2P98160 TSPY13P-201ENST00000338964 914 ntBASIC16.78■□□□□ 0.28
HSPG2P98160 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HSPG2P98160 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HSPG2P98160 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HSPG2P98160 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HSPG2P98160 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC16.77■□□□□ 0.27
HSPG2P98160 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HSPG2P98160 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC16.75■□□□□ 0.27
HSPG2P98160 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC16.75■□□□□ 0.27
HSPG2P98160 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC16.75■□□□□ 0.27
HSPG2P98160 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC16.75■□□□□ 0.27
HSPG2P98160 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC16.75■□□□□ 0.27
HSPG2P98160 AC004987.1-201ENST00000428627 508 ntBASIC16.75■□□□□ 0.27
HSPG2P98160 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
HSPG2P98160 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC16.74■□□□□ 0.27
HSPG2P98160 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC16.74■□□□□ 0.27
HSPG2P98160 AL451085.2-201ENST00000605085 799 ntBASIC16.74■□□□□ 0.27
HSPG2P98160 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
HSPG2P98160 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HSPG2P98160 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC16.74■□□□□ 0.27
HSPG2P98160 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
HSPG2P98160 GUK1-208ENST00000366728 842 ntTSL 2 BASIC16.73■□□□□ 0.27
HSPG2P98160 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HSPG2P98160 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC16.73■□□□□ 0.27
HSPG2P98160 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HSPG2P98160 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC16.71■□□□□ 0.27
HSPG2P98160 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC16.69■□□□□ 0.26
HSPG2P98160 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HSPG2P98160 CHST11-202ENST00000546689 756 ntTSL 2 BASIC16.69■□□□□ 0.26
HSPG2P98160 U85056.1-201ENST00000616429 682 ntBASIC16.69■□□□□ 0.26
HSPG2P98160 ATP5G2P3-201ENST00000429083 425 ntBASIC16.68■□□□□ 0.26
HSPG2P98160 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
HSPG2P98160 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HSPG2P98160 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HSPG2P98160 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms